PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6371_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

BES1

Protein Properties

Length: 342aa MW: 37257.7 Da PI: 9.7429

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6371_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	189.5	1.3e-58	3	169	1	148
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.....................kgskp 75 g+sgr ptwkErEnnkrRERrRRaiaakiyaGLRaqGn+klpk++DnneVlkALc+eAGwvve+DGttyr g kp Neem_6371_f_1 3 GSSGRLPTWKERENNKRRERRRRAIAAKIYAGLRAQGNFKLPKHCDNNEVLKALCAEAGWVVEEDGTTYRkicrfhcsigngfhdsrsfdfLGRKP 98 689*****************************************************************99999999999999998877777888 PP DUF822 76 l.eeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148 + + +e+ag+s ++s+++s+q s++ss+++spv+sy+asp+sssfpsp+++d +++ + llp+l++ ++++ Neem_6371_f_1 99 PpTPPEIAGASGNISTCTSVQPSPQSSSFPSPVPSYHASPTSSSFPSPTRFDANPS---TYLLPFLRNIASIPT 169 8899************************************************88...599999999887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.6E-60	4	151	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MTGSSGRLPT WKERENNKRR ERRRRAIAAK IYAGLRAQGN FKLPKHCDNN EVLKALCAEA 60 GWVVEEDGTT YRKICRFHCS IGNGFHDSRS FDFLGRKPPP TPPEIAGASG NISTCTSVQP 120 SPQSSSFPSP VPSYHASPTS SSFPSPTRFD ANPSTYLLPF LRNIASIPTN LPPLRISNSA 180 PVTPPLSSPT SRASKPKADW ESLSNGSLNS FRHPLFAVSA PSSPTRRQHF TPATIPECDE 240 SDASTVDSGR WVSFQTVVPP VTASAAPPSP TFNLVKPVFQ QNALNNTVDG QAGLTWGMAT 300 ERGRVSDFEF ESKRVKPWEG ERIHDIGVDD LELTLGSGKN RG

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MTGSSGRLPT WKERENNKRR ERRRRAIAAK IYAGLRAQGN FKLPKHCDNN EVLKALCAEA  60
GWVVEEDGTT YRKICRFHCS IGNGFHDSRS FDFLGRKPPP TPPEIAGASG NISTCTSVQP  120
SPQSSSFPSP VPSYHASPTS SSFPSPTRFD ANPSTYLLPF LRNIASIPTN LPPLRISNSA  180
PVTPPLSSPT SRASKPKADW ESLSNGSLNS FRHPLFAVSA PSSPTRRQHF TPATIPECDE  240
SDASTVDSGR WVSFQTVVPP VTASAAPPSP TFNLVKPVFQ QNALNNTVDG QAGLTWGMAT  300
ERGRVSDFEF ESKRVKPWEG ERIHDIGVDD LELTLGSGKN RG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	6e-24	7	76	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	6e-24	7	76	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	6e-24	7	76	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	6e-24	7	76	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023881253.1	1e-158	BES1/BZR1 homolog protein 2-like
Swissprot	Q94A43	1e-108	BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBL	V4UI01	1e-155	V4UI01_9ROSI; Uncharacterized protein
STRING	XP_006425734.1	1e-156	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11512	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75080.2	7e-87	BES1 family protein