PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6322_f_7

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

CO-like

Protein Properties

Length: 358aa MW: 41141.6 Da PI: 6.1589

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6322_f_7	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.2	6e-07	19	61	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+ ++e + l+C+ ++ lC C e H+ H++ Neem_6322_f_7 19 RRFCDYCNERTAVLYCRADSAKLCLPCDREVHSTnqlfskHSR 61 689*****9*******************66677777765 PP
2	zf-B_box	24.1	7.4e-08	63	109	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvpl 42 C+ ++ ++++fCe q lC +C e H++ H+++p+ Neem_6322_f_7 63 LLCDACDASPASIFCEIEQFVLCTNCDWENHSQgnlylspvHNRRPI 109 68*****************************7789999999988876 PP
3	CCT	63.7	5.7e-22	314	356	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ a++RYkeKrktR+++K+irYesRK++AesR R+KGrF++ Neem_6322_f_7 314 RDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIKGRFARI 356 899**************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.566	17	64	IPR000315	B-box-type zinc finger
SMART	SM00336	3.3E-14	17	64	IPR000315	B-box-type zinc finger
CDD	cd00021	5.76E-8	20	64	No hit	No description
PROSITE profile	PS50119	10.111	60	109	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.9E-5	63	108	IPR000315	B-box-type zinc finger
CDD	cd00021	1.60E-4	64	109	No hit	No description
SMART	SM00336	0.73	65	109	IPR000315	B-box-type zinc finger
Pfam	PF06203	5.4E-16	314	355	IPR010402	CCT domain
PROSITE profile	PS51017	14.872	314	356	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MTEQQPRQQQ HHQEEPPKRR FCDYCNERTA VLYCRADSAK LCLPCDREVH STNQLFSKHS 60 RSLLCDACDA SPASIFCEIE QFVLCTNCDW ENHSQGNLYL SPVHNRRPIE SFTGCPSVSE 120 LFTVVGFHHL DHKALFLTCE NGNNSNVSDE LSDFLAWEPP DFNRYASCGQ HKDEMLSQLR 180 QLAELEPNFK YESADVETFI GFQSPVPEPD FQPGNLHTSA ERDAEPVLFP AYETSSLQWP 240 TDSCEAANQR PLTSLRNHFE ESFTVPDKHL DTTGCVRNVS VSDGDEGRSQ HPITAETSPV 300 FPKVSVHELN SQDRDSAISR YKEKRKTRRY DKHIRYESRK VRAESRTRIK GRFARIDH

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MTEQQPRQQQ HHQEEPPKRR FCDYCNERTA VLYCRADSAK LCLPCDREVH STNQLFSKHS  60
RSLLCDACDA SPASIFCEIE QFVLCTNCDW ENHSQGNLYL SPVHNRRPIE SFTGCPSVSE  120
LFTVVGFHHL DHKALFLTCE NGNNSNVSDE LSDFLAWEPP DFNRYASCGQ HKDEMLSQLR  180
QLAELEPNFK YESADVETFI GFQSPVPEPD FQPGNLHTSA ERDAEPVLFP AYETSSLQWP  240
TDSCEAANQR PLTSLRNHFE ESFTVPDKHL DTTGCVRNVS VSDGDEGRSQ HPITAETSPV  300
FPKVSVHELN SQDRDSAISR YKEKRKTRRY DKHIRYESRK VRAESRTRIK GRFARIDH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444238.1	1e-165	zinc finger protein CONSTANS-LIKE 13
Refseq	XP_024045635.1	1e-165	zinc finger protein CONSTANS-LIKE 13
TrEMBL	A0A2H5NL06	1e-166	A0A2H5NL06_CITUN; Uncharacterized protein
STRING	XP_006444238.1	1e-165	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8148	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-82	B-box type zinc finger protein with CCT domain