PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_628_f_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 757aa MW: 83738.6 Da PI: 6.2294 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.2e-21 | 103 | 158 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Neem_628_f_5 103 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 158 7999************************************************9877 PP | |||||||
2 | START | 229.5 | 9.4e-72 | 278 | 496 | 7 | 206 |
HHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS START 7 aqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 +el k+a+a+ep+W +s+ e++n+de++++f+ ++ +s+ea+r++gvv+ +l++lv++++d++ qW+ +++ ka+t++vi+sg Neem_628_f_5 278 IEELKKMATAGEPLWIRSVetgrEILNYDEYIKEFSVENPsngkpkRSIEASRETGVVFVDLPKLVQSFMDVN-QWKAMFPclisKAATVDVICSGe 373 67999******************************88777999******************************.*********************** PP .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 ga+qlm+aelq+l+p+vp R+++fvRy++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+kv+wveh +++++++h Neem_628_f_5 374 ganrnGAVQLMFAELQMLTPMVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKATVHT 469 *****************************************************98.9**************************************** PP HHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 180 llrslvksglaegaktwvatlqrqcek 206 ++rs+v+sgla+ga++w+atlq qce+ Neem_628_f_5 470 MYRSIVNSGLAFGARHWMATLQLQCER 496 *************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-24 | 88 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.77E-21 | 90 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.22 | 100 | 160 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.3E-19 | 102 | 164 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-18 | 103 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.92E-17 | 107 | 158 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 135 | 158 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.497 | 263 | 499 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-32 | 265 | 496 | No hit | No description |
CDD | cd08875 | 2.53E-111 | 267 | 495 | No hit | No description |
SMART | SM00234 | 1.7E-72 | 272 | 496 | IPR002913 | START domain |
Pfam | PF01852 | 4.4E-57 | 278 | 496 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.2E-6 | 323 | 491 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.3E-15 | 525 | 744 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGAAAAS AAEANNEVEE GDEGSGGGGS 60 RREETLEISS ENSGPGRSRS DDEFDGGEHD DDEDGDKNKK KKRKKYHRHT AEQIREMEAL 120 FKESPHPDEK QRQQLSKQLG LAPRQVKFWF QNRRTQIKAI QERHENSLLK AEMEKLRDEN 180 KAMRETINKA CCPNCGMATT SRDTTVTTEE QQLRIENAKL KAEVEKLRAA AGKCPPGGTS 240 TSSCSAANDQ ENRSSLDFYT GIFGLEKSRI TELVNQGIEE LKKMATAGEP LWIRSVETGR 300 EILNYDEYIK EFSVENPSNG KPKRSIEASR ETGVVFVDLP KLVQSFMDVN QWKAMFPCLI 360 SKAATVDVIC SGEGANRNGA VQLMFAELQM LTPMVPTREV YFVRYCKQLS AEQWAIVDVS 420 IDKVEENIDA SLVKCRKRPS GCIIEDKSNG HCKVIWVEHL ECQKATVHTM YRSIVNSGLA 480 FGARHWMATL QLQCERLVFF MATNVPTKDS TGVATLAGRK SILKLAQRMT WNFCRAIAAS 540 SYHTWNKVAS KTGEDIRVSS RKNLNDPGEP HGVILCAVSS VWLPVSPHVL FDFLRDEAHR 600 NEWDIMSNGG PVQTIANLAK GQDRGNAVTI QAMKSKENSM WVLQDSCTNA YESMVIYAPV 660 DITGMQSVIT GCDSSNIAIL PSGFSILPDG LESRPLVITS RQEEKSTEGG SLLTIAFQIL 720 TNNSPTAKLT MESVESVNTL ISCTLQNIKT SLQCEDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 103 | KKKKRK |
2 | 98 | 104 | KKKKRKK |
3 | 100 | 104 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX600247 | 4e-89 | JX600247.1 Gossypium hirsutum clone NBRI_GE38006 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023875609.1 | 0.0 | homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | M5WXG0 | 0.0 | M5WXG0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228560.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12370 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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