PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_628_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

CPP

Protein Properties

Length: 540aa MW: 59255.2 Da PI: 8.7243

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_628_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	38.8	1.9e-12	116	155	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+C+Ck+s Clk+YCeCfaag +C+ C+C+ C+N+ e+ Neem_628_f_3 116 DRKHCRCKQSGCLKLYCECFAAGGYCDG-CNCNCCRNNVEN 155 689***********************.******9875 PP
2	TCR	50.2	5.2e-16	200	241	1	42
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k+++gC+Ckk+ Clk+YCeCf+a++ Cs++CkC dCkN+ee+ Neem_628_f_3 200 KHNWGCRCKKTGCLKNYCECFHAKVSCSKNCKCMDCKNSEEH 241 5899***********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	7.2E-12	115	155	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	33.586	116	240	IPR005172	CRC domain
Pfam	PF03638	2.4E-9	118	152	IPR005172	CRC domain
SMART	SM01114	1.5E-15	200	241	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.6E-12	203	238	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MSPPNAVLNF FPPKPSKLVE KANDSVTDKS SFPPKPTKSV EKSGVSPEKL VMQLVFTKFG 60 LSPVIKMPST KLSLSLSPAK PYTTLHSSFP FPLSKQKPPT SHQQTDMKRN NGAPTDRKHC 120 RCKQSGCLKL YCECFAAGGY CDGCNCNCCR NNVENEGLRK AAMESILQRN PNAFRPKIPT 180 SPSNAQDNVD DAKDNSMVGK HNWGCRCKKT GCLKNYCECF HAKVSCSKNC KCMDCKNSEE 240 HQEKVALPGR DYNSTKIFNN YEGYKKSVAV AGGGNTNTNI SKNFEGSKER EAITNADHGE 300 PNICKNFEGH KEAMACPRRA SRKRKLQEFL DLNEKDAPIQ KLKNHQKVNP LRVYSSLSAL 360 SVGPVGNVGN ASILNPKEFQ CSARSSFAEQ DVEQLCSLLV LASEAAKKVL DKNGNQAVRK 420 IQTANTSEVQ DSKIFEEEPN VQKETLDDHL SETEADATNT GSHISGGNEG KEGRLSSPGA 480 IALRSNGKDE LITGATKQDQ ILIHGCNGDV YLEQERLVLA SFRDCLKKII VLGNKKGEIL

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MSPPNAVLNF FPPKPSKLVE KANDSVTDKS SFPPKPTKSV EKSGVSPEKL VMQLVFTKFG  60
LSPVIKMPST KLSLSLSPAK PYTTLHSSFP FPLSKQKPPT SHQQTDMKRN NGAPTDRKHC  120
RCKQSGCLKL YCECFAAGGY CDGCNCNCCR NNVENEGLRK AAMESILQRN PNAFRPKIPT  180
SPSNAQDNVD DAKDNSMVGK HNWGCRCKKT GCLKNYCECF HAKVSCSKNC KCMDCKNSEE  240
HQEKVALPGR DYNSTKIFNN YEGYKKSVAV AGGGNTNTNI SKNFEGSKER EAITNADHGE  300
PNICKNFEGH KEAMACPRRA SRKRKLQEFL DLNEKDAPIQ KLKNHQKVNP LRVYSSLSAL  360
SVGPVGNVGN ASILNPKEFQ CSARSSFAEQ DVEQLCSLLV LASEAAKKVL DKNGNQAVRK  420
IQTANTSEVQ DSKIFEEEPN VQKETLDDHL SETEADATNT GSHISGGNEG KEGRLSSPGA  480
IALRSNGKDE LITGATKQDQ ILIHGCNGDV YLEQERLVLA SFRDCLKKII VLGNKKGEIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-24	113	247	7	130	Protein lin-54 homolog
5fd3_B	4e-24	113	247	7	130	Protein lin-54 homolog

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024948739.1	0.0	protein tesmin/TSO1-like CXC 6
STRING	XP_006465735.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	2e-54	Tesmin/TSO1-like CXC domain-containing protein