PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_615_f_5

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HD-ZIP

Protein Properties

Length: 320aa MW: 35928.1 Da PI: 4.545

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_615_f_5	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.7e-19	85	139	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k+ Neem_615_f_5 85 KKRRLTATQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSKN 139 56689***********************************************995 PP
2	HD-ZIP_I/II	121.9	3.2e-39	85	174	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++ qv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR k+++lEkdy++Lk+ayd+lk++ ++L ke+e L++e+ Neem_615_f_5 85 KKRRLTATQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSKNQRLEKDYDSLKAAYDKLKTDYDNLLKEKEVLHDEV 174 9*************************************************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-19	77	141	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.184	80	140	IPR001356	Homeobox domain
SMART	SM00389	5.7E-18	82	144	IPR001356	Homeobox domain
CDD	cd00086	1.96E-17	83	141	No hit	No description
Pfam	PF00046	2.7E-16	85	138	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-19	87	148	IPR009057	Homeodomain-like
PRINTS	PR00031	4.9E-6	111	120	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	115	138	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.9E-6	120	136	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.2E-12	141	181	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MAGGNICGSP NVAALLRNEK LPCSSNVLES FWMPKSSPTI QAPKPVVNFA NVGGGDTTST 60 QLFESLDKQQ NGFEDFEGCF NPPGKKRRLT ATQVQFLEKN FEVENKLEPE RKVQLAKELG 120 LQPRQVAIWF QNRRARSKNQ RLEKDYDSLK AAYDKLKTDY DNLLKEKEVL HDEVLVLQDK 180 LLIKEKGKEK SETPDAVNSL EAEPQKPITD TDTKLVSNVP VFACKQEDAN SVKSDVLDSS 240 GSPHSTDGNH SSLIDPADSS QAFEPEQSDF SQDEEDNLGK GLLPPPYFLK LEDCCYDDPR 300 TNSCNLGFSI EDQPFWFWPY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021293441.1	1e-144	homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBL	A0A061E6H9	1e-142	A0A061E6H9_THECC; Homeobox-leucine zipper protein HAT5, putative isoform 1
TrEMBL	A0A2N9EC56	1e-142	A0A2N9EC56_FAGSY; Uncharacterized protein
STRING	EOY00208	1e-143	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-38	homeobox 1