PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_606_f_9
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARR-B
Protein Properties Length: 670aa    MW: 74975.8 Da    PI: 5.8986
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_606_f_9genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like262e-08200228129
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtP 29 
                   k+r++W+ +LH++Fv+av+q+G  +k  P
  Neem_606_f_9 200 KARVVWSVDLHQKFVKAVNQIGFDKKMLP 228
                   68*******************88777777 PP
2G2-like25.92.2e-082502732851
       G2-like  28 tPktilelmkvkgLtlehvkSHLQ 51 
                    Pk+il+lm+v+ Lt+e+v+SHLQ
  Neem_606_f_9 250 GPKKILDLMNVPWLTRENVASHLQ 273
                   6*********************** PP
3G2-like37.94.1e-122963232855
       G2-like  28 tPktilelmkvkgLtlehvkSHLQkYRl 55 
                    Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Neem_606_f_9 296 GPKKILDLMNVPWLTRENVASHLQKYRL 323
                   5**************************8 PP
4Response_reg80.74.9e-27201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev+++  +++al ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
  Neem_606_f_9  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 114
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
  Neem_606_f_9 115 DYLLKPIRMKELRN 128
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.6E-4417161No hitNo description
SuperFamilySSF521722.28E-3517142IPR011006CheY-like superfamily
SMARTSM004486.9E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.14319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.40E-2921134No hitNo description
Gene3DG3DSA:1.10.10.604.9E-20198273IPR009057Homeodomain-like
SuperFamilySSF466894.3E-9198274IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-7248274IPR006447Myb domain, plants
SuperFamilySSF466891.16E-6293327IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-10295323IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.2E-13295328IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MENGFSSPRN DAFNPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA RDALSLLRER  60
KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKRIHE VRDIENIEGF ESIQMTRSGS DQSDDGHFLP GEDLTFARKR  180
KDAESKHDDK DSGDASSTKK ARVVWSVDLH QKFVKAVNQI GFDKKMLPAT WSLSCFHRAM  240
TCNMCLAEVG PKKILDLMNV PWLTRENVAS HLQVDTLRFC CQVKLFIYFP SFREVGPKKI  300
LDLMNVPWLT RENVASHLQK YRLYLSRLQK ENELKSAIGG IKQTDSPSKD SANSFGLQNS  360
INLHHHNDVS SGSYGFSGSN SLVQNVNPKG LEGDLKGIVT IPVAESKRPL TVDIPNQRNI  420
RSSRNSQIGF DCSFAAGESE VSFTAFDSTI PSQYPWSDVP ETQFKPEHKP LQLEDGYSQL  480
SLPAPGHHIQ NDRLQSCPSI SPGPSVADRD NNLKPLDAMY KSNYASAIPV GSAVDSFPVQ  540
TKSHMVNHQS FEPIPTAISS IKSQGLNLSC ISDLESAQRN INWGFGSSLA ALDDDLQFCW  600
LQGDCLAMNL GLQDINCSGY NDPGLISEVP FHLYDTMRFD YDHYYDPTEY SVIDQDGCIA  660
VMGDNAQGQK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484016.10.0two-component response regulator ARR11 isoform X1
RefseqXP_006484017.10.0two-component response regulator ARR11 isoform X2
TrEMBLA0A2H5NV410.0A0A2H5NV41_CITUN; Uncharacterized protein
STRINGXP_006484017.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-131response regulator 11