PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6059_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 644aa    MW: 72258.4 Da    PI: 6.6622
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6059_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.13.9e-103964361654
                    HHHHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  16 eelFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    e++F+   n+yp+ +e+  LA+++gLt++qV++WF N R +
  Neem_6059_f_3 396 EACFYGfsNSYPNDSEKLMLASQTGLTKNQVSNWFINARVR 436
                    67888556*******************************88 PP
2BELL106.71.5e-34249320172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    e++el+ ++akL+slleeV+ +Y+ y++q++ v++sFe++aglg+ak+Yt++Al+a+SrhF +L+dai++qi
  Neem_6059_f_3 249 EKHELHLRIAKLISLLEEVESKYEVYYHQMEEVVASFEMIAGLGAAKSYTAMALQAMSRHFGNLRDAIISQI 320
                    689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.8E-34181318IPR006563POX domain
PfamPF075261.3E-37187316IPR006563POX domain
SMARTSM003892.7E-7368444IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-23373446IPR009057Homeodomain-like
PROSITE profilePS5007111.629396440IPR001356Homeobox domain
SuperFamilySSF466892.35E-13397448IPR009057Homeodomain-like
PfamPF059205.1E-12403436IPR008422Homeobox KN domain
CDDcd000861.43E-9404441No hitNo description
Gene3DG3DSA:3.10.110.102.7E-41484620IPR016135Ubiquitin-conjugating enzyme/RWD-like
SuperFamilySSF544952.42E-38489611IPR016135Ubiquitin-conjugating enzyme/RWD-like
CDDcd001952.24E-34500600No hitNo description
SMARTSM002123.4E-46501644No hitNo description
PROSITE profilePS5012728.308501620IPR000608Ubiquitin-conjugating enzyme E2
PfamPF001792.7E-37502637IPR000608Ubiquitin-conjugating enzyme E2
PROSITE patternPS001830571586IPR023313Ubiquitin-conjugating enzyme, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MVSKDSPPNP ASNMLHQFIM SDSITTQNLA DQHFDTYGSA LRGNNAYPQS LGLLPSIQSL  60
EERISRSMEL VHAPAVAEES SEISHSRHLM DLLGASNETN DQSQSLSLSL SSHMLVPSVH  120
YNQRSLNSDI AVPNYLFFGD ESREVCNPGV EHVSEGFSFT GGTFSSSSTS LNRSCSSDGT  180
ESFAYAVGSS RFLKPAQSLL EEVVNVGKNI GMNDERYIRK LYHGSRRGGL RLSTELKAEL  240
CRTGILSAEK HELHLRIAKL ISLLEEVESK YEVYYHQMEE VVASFEMIAG LGAAKSYTAM  300
ALQAMSRHFG NLRDAIISQI NATSRRYSQD MPKLSTGISQ LCLLDRETRH NRVSLQQLGM  360
FQSQSQIWRP IRGLPETSVT ILRSWLFEHF LHPFTEACFY GFSNSYPNDS EKLMLASQTG  420
LTKNQVSNWF INARVRLWKP MIEEMYREEI ADSSEDSNPS FVSSSAAKEG KRPDGTVSLL  480
VEVMTSSSAA SRKALSKIAT NRLQKELVEW QVNPPVGFKH KVTDNLQRWI IEVNGAPGTL  540
YANETYQLQV DFPEHYPMEA PQVIFLPPAP LHPHIYSNGH ICLDILYDSW SPAMTVSSVC  600
ISILSMLSSS TVKQRPADND RYVKNCRNGR SPKETRWWFH DDKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2mt6_A2e-465026427149Ubiquitin-conjugating enzyme E2 W
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435067.10.0BEL1-like homeodomain protein 11 isoform X2
RefseqXP_024040268.10.0BEL1-like homeodomain protein 11 isoform X2
RefseqXP_024040269.10.0BEL1-like homeodomain protein 11 isoform X2
TrEMBLA0A067GYM10.0A0A067GYM1_CITSI; Uncharacterized protein
TrEMBLA0A2H5NSC90.0A0A2H5NSC9_CITUN; Uncharacterized protein
STRINGXP_006435067.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.15e-99BEL1-like homeodomain 11