PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6054_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 757aa    MW: 83050.9 Da    PI: 6.1502
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6054_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
    Neem_6054_f_4 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.53E-161871IPR009057Homeodomain-like
PROSITE profilePS5129420.4861973IPR017930Myb domain
TIGRFAMsTIGR015576.0E-172271IPR006447Myb domain, plants
SMARTSM007177.3E-132371IPR001005SANT/Myb domain
PfamPF002493.1E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-82464IPR009057Homeodomain-like
CDDcd001671.46E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MDTYSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KPIGCIQELT KLIRDYPILL LEKEAFTKGI PIGQAIDIDI PPPRPKRKPC  120
NPYPRKTCTS APTSHVGVKD GKVLTSVSSL RCKQVLDLEK EPISDRPNGD ERSNYTKENQ  180
EDNCSEVFTL HQEGHCSSIS SVNKTSIPTP LGFRDSCTFK EFVPSLKEVV NRDETHQSYV  240
TVELKGNEKF DKPDAKQALQ DNGTSKPSNS ESFCHSHDKP VHGEKTDDLT GALPADEMQA  300
SQNYPRHVAV HILDGSLGTC NQDMPVQESI FHPMGEVHGN LVTNPSASAT AENQSNLPRS  360
THQPFPTFHP PFSPFRLNQD DYRSFLHISS TFSSLIVSTL LQNPAAHAAA SFAATFWPYA  420
NMETSADSPA SATVAAATAW WAAHGLLPLC APVHAAFSCP PTSATAVSSM DTAQVPAAKA  480
GKKDNGPPNP PLEGQLDPEY SEALQAQNSA SKSLTVSSSD SEESANAKLN SGSKVADHEK  540
TAEENDLHDS NKTNRKQVDR SSCGSNTPSS SEVETDALEK HEKGNEEAKE VDANYAATDS  600
STRRSRSSCN ISESWKEVSE EGRLAFQALF SREVLPQSFS PPHDLKNMLL EEEDKQNGNE  660
KDGDASLLDL NSKTWGGSCS GHQEVEKSLF CKGENNGEEG LPTIGLGQGK LKARRTGFKP  720
YKRCSVEAKE NRAVNTGGNQ SEEKGPKRIR LEGESST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491389.10.0protein LHY-like isoform X1
RefseqXP_006491390.10.0protein LHY-like isoform X1
RefseqXP_006491391.10.0protein LHY-like isoform X1
RefseqXP_006491392.10.0protein LHY-like isoform X1
TrEMBLA0A2H5NY380.0A0A2H5NY38_CITUN; Uncharacterized protein
STRINGXP_006491389.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55762645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.31e-128MYB_related family protein