PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6031_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 317aa MW: 36568 Da PI: 9.3087

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6031_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.3	1.1e-43	12	155	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksg 81 p GfrFhPtd+el+ +yLkkkv +++ +l ++i++vdiyk++Pw+Lp k+ +++e++fFs+rd+ky+ + r+nrat+sg Neem_6031_f_1 12 PLGFRFHPTDQELIIHYLKKKVISSSlYPLLSIIADVDIYKFNPWELPGalylllflddlfkhrKALFGKSELFFFSPRDRKYPIDARPNRATASG 107 89*****************999887788899***********55899999999886543333888********************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkat +dk++l++ +++ g+kk Lvfy+gr pkg kt+W++ eyrl Neem_6031_f_1 108 YWKATRTDKPILKStGSQCLGVKKALVFYQGRPPKGIKTNWMVLEYRL 155 ********99667779************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-51	5	184	IPR003441	NAC domain
PROSITE profile	PS51005	50.852	11	184	IPR003441	NAC domain
Pfam	PF02365	1.8E-22	12	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEPMNVPSST FPLGFRFHPT DQELIIHYLK KKVISSSLYP LLSIIADVDI YKFNPWELPG 60 ALYLLLFLDD LFKHRKALFG KSELFFFSPR DRKYPIDARP NRATASGYWK ATRTDKPILK 120 STGSQCLGVK KALVFYQGRP PKGIKTNWMV LEYRLIDDNN LLLSQRVKGS MRLDDWVLCR 180 VRHKSKARSP KQITEHDTVI SCSSPLDLQD QDREIMKENA NIYDQLQAYL MAPQEIIEAK 240 LDQQTQLGFP IFESPDYTAS SLEYSKPIMV SSRRDALYSL NSNALAIGAL DETTAKCFQF 300 YQQRGEQTHF PNFFSNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	10	187	16	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	10	187	16	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	10	187	16	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	10	187	16	168	NO APICAL MERISTEM PROTEIN
4dul_A	1e-53	10	187	16	168	NAC domain-containing protein 19
4dul_B	1e-53	10	187	16	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002305109.1	1e-92	protein FEZ
Refseq	XP_011027935.1	1e-92	PREDICTED: protein FEZ-like
Swissprot	Q9LD44	3e-62	NAC56_ARATH; NAC transcription factor 56
TrEMBL	B9H2P9	3e-91	B9H2P9_POPTR; Uncharacterized protein
STRING	POPTR_0004s04920.1	4e-92	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19285	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	3e-60	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]