PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5994_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YA
Protein Properties Length: 376aa    MW: 41124.7 Da    PI: 8.7185
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5994_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.31.1e-27174247158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk.................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQy++Il+RRq Rak+e ekk                 + +   kpylheSRh hA+rR+Rg+gGrF
  Neem_5994_f_1 174 EEPVYVNAKQYHGILRRRQLRAKAELEKKlikvrkliaiavvaftnI-HVVLKPYLHESRHLHAMRRARGCGGRF 247
                    69*****************************************9864.6678**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.5E-30172250IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.939173250IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-26175247IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MHHNANGTNN QVPEVNSNNS YAVSSQRWWH GIGHDDVSRD MSVESMANIS LSGEPINSGL  60
ATKTSKSLVK GGMDGGADAN KEMLITALPQ SHGKFGEHQP PQHAASIMHS QLGEYLPPST  120
QLELVGHSVA CASYPYSDSY YGGAVPVYGP QALVHSHCVG VHSTRMALPL EMAEEPVYVN  180
AKQYHGILRR RQLRAKAELE KKLIKVRKLI AIAVVAFTNI HVVLKPYLHE SRHLHAMRRA  240
RGCGGRFLNT KKLDIQASNA MSNHDTSSSV PSTQAPNSSS SESAATHYSR SSDSSTAHRE  300
ATDPQVQPEQ RGSSGNGKTY HDDNGNSNGF YLDRQGFQLF KYHPLSDNLV EEGDFSGQQS  360
ERIVANRAQH RALTIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-16174254265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044821.11e-170nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_024044824.11e-170nuclear transcription factor Y subunit A-1 isoform X1
TrEMBLA0A2H5QAW51e-168A0A2H5QAW5_CITUN; Uncharacterized protein
STRINGXP_006489920.11e-166(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156021015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-41nuclear factor Y, subunit A1