PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5920_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ERF | ||||||||
Protein Properties | Length: 113aa MW: 13177.6 Da PI: 11.5512 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.1 | 1.9e-12 | 47 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++G+ +++ +grW+ I + r + +lg+++ a+eA++ +++ + kl+ Neem_5920_f_4 47 KKFRGIQQRP-WGRWATKIIHK-----RIQLWLGTYDIAKEARRVYDNTAIKLRA 95 59********.*****999994.....6************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.0E-21 | 1 | 112 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 8.05E-19 | 47 | 102 | No hit | No description |
SMART | SM00380 | 8.0E-18 | 48 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.003 | 48 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-14 | 48 | 103 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-18 | 48 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-7 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-7 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MKVLRLKRYV NEVCIELTPS KNSNTAALTS NRKRITTDVS VCRLPIKKFR GIQQRPWGRW 60 ATKIIHKRIQ LWLGTYDIAK EARRVYDNTA IKLRAPNTVT NFSTPPVKEI KKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610252.1 | 7e-32 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A2P5XNR1 | 2e-30 | A0A2P5XNR1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G200400.1 | 2e-30 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-26 | cytokinin response factor 4 |