PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5852_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

BES1

Protein Properties

Length: 562aa MW: 63465.7 Da PI: 6.3991

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5852_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	157.2	1.2e-48	8	142	1	138
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq. 95 +g+g+k+++kE+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr+++ p ++++ ++ +s+ s+l+ Neem_5852_f_3 8 AGKGKKEREKEKERTKLRERHRRAITSRMLTGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRQSQ-P---MQQMATFPVRSVDSPLSt 99 5899****************************************************************653.4...478888999999999988 PP DUF822 96 sslkssalaspvesysaspksssfpspssldsislasaasllp 138 +slk++++++ v+ + ++++ ++++sp+s+ds+ + + +++ Neem_5852_f_3 100 NSLKTCSVKAAVDCQPSVLRIDESLSPASFDSVVIPERDTRSE 142 99*****************************9988743333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.2E-48	9	154	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.16E-115	182	559	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.4E-123	182	560	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.4E-58	183	524	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-35	185	206	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-35	278	300	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-35	361	380	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-35	395	411	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-35	412	423	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.8E-35	430	453	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MSPTNTAAGK GKKEREKEKE RTKLRERHRR AITSRMLTGL RQYGNFPLPA RADMNDVLAA 60 LAREAGWTVE ADGTTYRQSQ PMQQMATFPV RSVDSPLSTN SLKTCSVKAA VDCQPSVLRI 120 DESLSPASFD SVVIPERDTR SEMNAGTSPI NSVGCLEADQ LLQDVRSGEH ENDFTGTPYV 180 PVYVVMAFHE YGANDSGDVL ISLPQWVMEI GKGNQDIFFT DREGRRNTEC LSWGVDKERV 240 LHGRTGIEVY FDFMRSFRTE FDDLFVAGLI TAVEIGLGPS GELKYPSSSD RMGWRYPGIG 300 EFQQIKALSG MRLTLSFWEE QNLRKAAKLR GHSFWARGPD NAGQYNSRPH DTGFFCERGD 360 YDSYYGRFFL HWYAQTLIDH ADNVLSLASL AFEETKIIVK VPAIYWWYKT ASHAAELTAG 420 YYNPMNQDGY SPVFEVLKKH SVTMKFVCSV PSLQDHEALA DPEGLSWQIL VCTIKLLTDS 480 HLLLKVLNSG WDRGLMVAGE NALSCYDREG CMRVVDMAKP RNDPDRRHFS FFVYQQPSTL 540 LRGTICFSDL DYFIKCMHGT NS

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MSPTNTAAGK GKKEREKEKE RTKLRERHRR AITSRMLTGL RQYGNFPLPA RADMNDVLAA  60
LAREAGWTVE ADGTTYRQSQ PMQQMATFPV RSVDSPLSTN SLKTCSVKAA VDCQPSVLRI  120
DESLSPASFD SVVIPERDTR SEMNAGTSPI NSVGCLEADQ LLQDVRSGEH ENDFTGTPYV  180
PVYVVMAFHE YGANDSGDVL ISLPQWVMEI GKGNQDIFFT DREGRRNTEC LSWGVDKERV  240
LHGRTGIEVY FDFMRSFRTE FDDLFVAGLI TAVEIGLGPS GELKYPSSSD RMGWRYPGIG  300
EFQQIKALSG MRLTLSFWEE QNLRKAAKLR GHSFWARGPD NAGQYNSRPH DTGFFCERGD  360
YDSYYGRFFL HWYAQTLIDH ADNVLSLASL AFEETKIIVK VPAIYWWYKT ASHAAELTAG  420
YYNPMNQDGY SPVFEVLKKH SVTMKFVCSV PSLQDHEALA DPEGLSWQIL VCTIKLLTDS  480
HLLLKVLNSG WDRGLMVAGE NALSCYDREG CMRVVDMAKP RNDPDRRHFS FFVYQQPSTL  540
LRGTICFSDL DYFIKCMHGT NS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	4e-87	185	559	89	443	Beta-amylase
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX139698	2e-78	JX139698.1 Citrus trifoliata beta-amylase 7 (BAM7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017637365.1	0.0	PREDICTED: beta-amylase 8 isoform X3
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A1Q3BYF7	0.0	A0A1Q3BYF7_CEPFO; Beta-amylase
STRING	XP_004164169.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10888	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]