PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5846_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ZF-HD
Protein Properties Length: 272aa    MW: 29540.1 Da    PI: 7.195
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5846_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.7e-3280137260
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                    + ++YkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e e
  Neem_5846_f_1  80 KMIKYKECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEIEGE 137
                    5789*************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.6E-2982134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2682137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-3183134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.27884133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.0E-12227261IPR009057Homeodomain-like
SuperFamilySSF466891.73E-5229260IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MELSSQEGEI PIPINSSLIS GGNGHGGHAH IIHHHHPASH DLIIPASSSS PTPQTQIPPL  60
RGPISTSSED HINPPTNVKK MIKYKECLKN HAAAMGGNAT DGCGEFMPSG EEGTIEALNC  120
SACNCHRNFH RKEIEGEQQQ QQQQAAISPF DCYHHNPHFN RVGRKVILGH HKNILAATPE  180
ALGYPTATGT LISSRAAAPT PHQMIMSYNM GSLPSESDEQ EDVGGVKQEE SVVQQFCQEI  240
GVKRRVLKVW MHNNKHNLAK KNNPPPPSTT TA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5921812e-53EF592181.1 Mangifera indica clone MiIIHR01 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470838.11e-127zinc-finger homeodomain protein 4
TrEMBLA0A067DTZ01e-125A0A067DTZ0_CITSI; Uncharacterized protein
STRINGXP_006470838.11e-127(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-53homeobox protein 31