PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5683_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 929aa MW: 101393 Da PI: 6.8088 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.9 | 5.4e-06 | 493 | 513 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ G C+ G++CkF+H+ Neem_5683_f_2 493 YCHHYLK-GRCQEGEKCKFSHD 513 5******.*************7 PP | |||||||
2 | zf-CCCH | 20.4 | 9.1e-07 | 547 | 567 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f + G+C++Gd C F+H Neem_5683_f_2 547 PCSNFVAKGFCNRGDDCLFSH 567 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.272 | 488 | 515 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0034 | 489 | 514 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 489 | 513 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.723 | 517 | 544 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-4 | 517 | 543 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.02 | 545 | 569 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-5 | 546 | 570 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.131 | 547 | 570 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 929 aa Download sequence Send to blast |
MEKSQIETTS FCISAHRHLK SETYRTLIQI LSHCYEHSQI SAPPQEPPPE ISEHGELVGP 60 ASTAPKNSKA EKDAALDESL GAVCIEDRGL GDARMAIDEI EDIMQVEENE DLSKQNPMVG 120 ISAEGTGSRD EGFDRQQRLM DELEHIMKGD EVLVQENDIS FSNMCVGNDQ SGVVALVNGR 180 EEHADVQQVV NEESRSEAWL QVDRGDCNLD ISNSFDSSAS RNIDSQVSKL YEDGEDRNSS 240 LRTNALEVEN DMQQKEMEEE KLVLTDGRTG ASNYGAEDVE VEEGEISDSF DVDGISIDMI 300 SDHAVVSNET KVSEDVIDKR DLFSNGQNRG TEIFSESYSF NLNVVDQVNS GRVVELKEMV 360 RDEKQCKSNI TADGTAMMAI DADRYNFMPQ AGRNKRKASR DEVNIGSFSV CAENSKVHGE 420 IVEQSATQKQ GITYKEKQQD SGVCNKKKRS APSKERKAKK KQKERKRRAE KNRQLGVKRL 480 KLRPIVKPKT VTYCHHYLKG RCQEGEKCKF SHDTVPLTKS TPCCHFARKS CMKGDDCPFD 540 HDLSKYPCSN FVAKGFCNRG DDCLFSHKIP PKKDGSSSSS ACLPQLKSPL LLHTLNSLKQ 600 PNVDQVSRQN AGVLSNNGDV SSSKNVQQNV AKPVLKPPAL APKGINCLFV GKSLVVESSK 660 LKQGSSSPKR NKSGKVANQT EQNASGTVQN MDETPKQILA APKGVNFLSI GNSSLENSSG 720 KKLASLFLSR ENGAKFSQSS TSSVHGAESN AKVGNLATHS VSSSVEKSND MLKKTQSIVT 780 PQRLNFLSNG NALTNNSLSD KQDSLPASSG SGSNVSLQVN QHTTDAHQNS SAILWRLPAS 840 PLASGHSSDR LAHGYYKSTP NSAQKALMST LAFAAKIESE MKISLSAVNN GFNSSTRDSG 900 NDGGRSTELA LQIGIENSCR LKTGGYKVK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 446 | 467 | KKRSAPSKERKAKKKQKERKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451497.1 | 0.0 | uncharacterized protein LOC18054491 | ||||
TrEMBL | V4UFB3 | 0.0 | V4UFB3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006451497.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17241 | 7 | 8 |