PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5679_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 166aa    MW: 19341.9 Da    PI: 5.8548
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5679_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.12.5e-17161367128
            NAM   7 FhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                    F+P++e++  + L+ kv+g    ++++++ke+++ k++P++L+  +++++ +++yfF++  +    +  + r +k g+W+   +  e +s++g   
  Neem_5679_f_1  16 FSPSEEQIF-HLLQLKVSGVAgRPEFDHMKEIELDKYKPRELQsVAYESGGEKYYFFAPIYQ---DEIVADRRAKGGIWEVMIS--EFKSRDGYPF 105
                    99**99988.99*****99887777799**************95577777888899998755...45567777799****9877..56666799** PP

            NAM 101 glkktLvfy...kgrapkgektdWvmheyrl 128
                     +k+ L++y   + +a+++++tdW+m+ey+l
  Neem_5679_f_1 106 AMKTRLIYYtqgQDTASQPVETDWCMKEYTL 136
                    *********76556888999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.8759155IPR003441NAC domain
PfamPF023659.0E-916136IPR003441NAC domain
SuperFamilySSF1019411.7E-1716155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MRQLPRNPSP VQLEAFSPSE EQIFHLLQLK VSGVAGRPEF DHMKEIELDK YKPRELQSVA  60
YESGGEKYYF FAPIYQDEIV ADRRAKGGIW EVMISEFKSR DGYPFAMKTR LIYYTQGQDT  120
ASQPVETDWC MKEYTLGEGK NNEESSWALC VVYLKRSPQR VRNLNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-10NAC domain containing protein 57