PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5673_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB

Protein Properties

Length: 1011aa MW: 109466 Da PI: 4.7998

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5673_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.9e-09	62	103	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ d + +G++ +++Ia+ + +t +c+++++k Neem_5673_f_4 62 PWTPEEREIFMDKLATFGKD-FRKIASFLD-YKTTADCVEFYYK 103 8***************99.*****.9********98 PP
2	Myb_DNA-binding	35.3	2.7e-11	277	318	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT eE ++++av +G++ ++ Iar++ +R++ qck ++ k Neem_5673_f_4 277 DWTDEEKSIFIQAVSSYGKD-FSMIARCVR-TRSRDQCKVFFSK 318 6***************99.*****.******88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.47E-14	46	107	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.947	58	109	IPR017884	SANT domain
SMART	SM00717	1.3E-8	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-6	61	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-6	62	107	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.057	273	324	IPR017884	SANT domain
SMART	SM00717	3.7E-9	274	322	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.34E-11	275	324	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-7	277	318	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-8	277	317	IPR001005	SANT/Myb domain
CDD	cd00167	3.32E-8	278	316	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1011 aa Download sequence Send to blast
MEIVNFTSKL LCDSQVKVYR DFLKMPALML DNREKMASRF ISNNGLVEDP CAVEKERAMI 60 NPWTPEEREI FMDKLATFGK DFRKIASFLD YKTTADCVEF YYKNHKSDSF EKLKKQHDFS 120 KQGKASTNTY LVTSGKRNRK MNAASLDILG EASEMAAAAQ VDNCRLISSG RISLGGGVSK 180 ISLGDDGIIE RSSSFDVVGS ERETAAADVL AGICGSLSSE AMSSCITSSV DPGEGQREWR 240 HQKVDSVMRR PSTSDVTQNV DDDSCSDESG GEMDPSDWTD EEKSIFIQAV SSYGKDFSMI 300 ARCVRTRSRD QCKVFFSKAR KCLGLDLIHT GQGNVGTSVN DDGNGGGSDT EDACVLETSS 360 AICSDKLDSK MDEDLRTHLM NINQDESVPA GAMSLQNDLN KSEDDNGAEV LGAGAMSLQN 420 DLNKSEDDNG AEVLDDKDSE DVKHLIYDAC KMEDMHYELE CHSKNGVCNQ SESVLAKKNA 480 AGLAATDGGV SASAGEPVDP CPSSSNALEE TIEVLAEAST KGFGHGLEGH NGLNDEQDKN 540 GNVDTSGESE MVLDSDAPGN ALDLAVDASS CSVPLKLDAV DNPPVISLPQ ENSHAVATFM 600 HQDSSVRQYE KMLNQDRMSS TLDLQGNKDK NAHKSVSSND YHQDVTGHSL LNHDESSQIL 660 KGYPLAVPTN KEMSGDINCR QLSEVQSVLT SDRNTDGPYL SQDCYLRKCN SSTSYSSIAE 720 LPLLSQNVEE TSDHPKTHSH SLSDPEKPCK NGDVKLFGKI LSHPSSSQKS NFGSHENEEK 780 GAHNHKQSSK ASNVKFTAQH PTDGSAAVLK FDRNNYVGLE NVPVRSYGFW DGNRIQTGFS 840 SLPDSAILLA KYPAAFSNYP ASSSKMEQQS LQAVVKSNER NLNGVAVLPS REINSSSGVV 900 DYQVYRSREG TKVQPFTVDM KQRQELIFSE MQRRNGFETL PSLQQQGKGM VGVNVVARGG 960 ILVGGGGGGG SCTGVSDPVA AIRMHYAKNG GQGGSIIGEE ESWRGKGDIG R

Sequence ? help Back to Top

Protein Sequence Length: 1011 aa Download sequence Send to blast

MEIVNFTSKL LCDSQVKVYR DFLKMPALML DNREKMASRF ISNNGLVEDP CAVEKERAMI  60
NPWTPEEREI FMDKLATFGK DFRKIASFLD YKTTADCVEF YYKNHKSDSF EKLKKQHDFS  120
KQGKASTNTY LVTSGKRNRK MNAASLDILG EASEMAAAAQ VDNCRLISSG RISLGGGVSK  180
ISLGDDGIIE RSSSFDVVGS ERETAAADVL AGICGSLSSE AMSSCITSSV DPGEGQREWR  240
HQKVDSVMRR PSTSDVTQNV DDDSCSDESG GEMDPSDWTD EEKSIFIQAV SSYGKDFSMI  300
ARCVRTRSRD QCKVFFSKAR KCLGLDLIHT GQGNVGTSVN DDGNGGGSDT EDACVLETSS  360
AICSDKLDSK MDEDLRTHLM NINQDESVPA GAMSLQNDLN KSEDDNGAEV LGAGAMSLQN  420
DLNKSEDDNG AEVLDDKDSE DVKHLIYDAC KMEDMHYELE CHSKNGVCNQ SESVLAKKNA  480
AGLAATDGGV SASAGEPVDP CPSSSNALEE TIEVLAEAST KGFGHGLEGH NGLNDEQDKN  540
GNVDTSGESE MVLDSDAPGN ALDLAVDASS CSVPLKLDAV DNPPVISLPQ ENSHAVATFM  600
HQDSSVRQYE KMLNQDRMSS TLDLQGNKDK NAHKSVSSND YHQDVTGHSL LNHDESSQIL  660
KGYPLAVPTN KEMSGDINCR QLSEVQSVLT SDRNTDGPYL SQDCYLRKCN SSTSYSSIAE  720
LPLLSQNVEE TSDHPKTHSH SLSDPEKPCK NGDVKLFGKI LSHPSSSQKS NFGSHENEEK  780
GAHNHKQSSK ASNVKFTAQH PTDGSAAVLK FDRNNYVGLE NVPVRSYGFW DGNRIQTGFS  840
SLPDSAILLA KYPAAFSNYP ASSSKMEQQS LQAVVKSNER NLNGVAVLPS REINSSSGVV  900
DYQVYRSREG TKVQPFTVDM KQRQELIFSE MQRRNGFETL PSLQQQGKGM VGVNVVARGG  960
ILVGGGGGGG SCTGVSDPVA AIRMHYAKNG GQGGSIIGEE ESWRGKGDIG R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	7e-15	29	111	12	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	7e-15	29	111	12	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006485885.1	0.0	uncharacterized protein LOC102608361 isoform X3
TrEMBL	V4VB50	0.0	V4VB50_9ROSI; Uncharacterized protein
STRING	XP_006485882.1	0.0	(Citrus sinensis)
STRING	XP_006436269.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-114	MYB family protein