PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_55_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SRS

Protein Properties

Length: 387aa MW: 43494.9 Da PI: 8.5511

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_55_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26.8	1.5e-08	34	121	5	90
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk.....stWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 + +C +CGn a+ C ++ C+ CC C+ h k st + ++ +r l+a ++ ++ +++++ ++ +++ ++ + t+ Neem_55_f_1 34 KPKCIQCGNVARSRCPYQSCKSCCSKAQNPCHIHGKlflpvSTSLKGSRYANRAVVLKANATFPDKTPTSSTPSTEQ---KSTDASPAGTS 121 568*******************************9944444444444454454444333333222222222222222...22222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-5	36	109	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAASSPALSN NATDSLTTTL HRDTPPKTLR GLNKPKCIQC GNVARSRCPY QSCKSCCSKA 60 QNPCHIHGKL FLPVSTSLKG SRYANRAVVL KANATFPDKT PTSSTPSTEQ KSTDASPAGT 120 SLRVASLRQL SNNFAQFNNV QMPLRSRKPL TRKDAAAINE WRFSKLKEYR DRNVEVENEA 180 FDRYMQNICL LEEVFSVKSI LDGSNEDESS IANPASNSVE EESEMMISGL KLKLRSNPMR 240 SEIFRKRMQQ IVDLGLKKLQ SELNGKANEI NDQNESEKSP KKAKFWWSER ASALNDVIDK 300 LNKARTDEDP KSYTKLKSQL HNLHTQSIDT ETQQDMVSEK QTERNDVASR EESGYVLPKL 360 LTTTEIDQER LTSIDAHFSS LENIEDL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAASSPALSN NATDSLTTTL HRDTPPKTLR GLNKPKCIQC GNVARSRCPY QSCKSCCSKA  60
QNPCHIHGKL FLPVSTSLKG SRYANRAVVL KANATFPDKT PTSSTPSTEQ KSTDASPAGT  120
SLRVASLRQL SNNFAQFNNV QMPLRSRKPL TRKDAAAINE WRFSKLKEYR DRNVEVENEA  180
FDRYMQNICL LEEVFSVKSI LDGSNEDESS IANPASNSVE EESEMMISGL KLKLRSNPMR  240
SEIFRKRMQQ IVDLGLKKLQ SELNGKANEI NDQNESEKSP KKAKFWWSER ASALNDVIDK  300
LNKARTDEDP KSYTKLKSQL HNLHTQSIDT ETQQDMVSEK QTERNDVASR EESGYVLPKL  360
LTTTEIDQER LTSIDAHFSS LENIEDL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006477043.1	0.0	uncharacterized protein LOC102615497 isoform X2
TrEMBL	A0A067EP79	0.0	A0A067EP79_CITSI; Uncharacterized protein
STRING	XP_006477042.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7362	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-104