PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5527_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 42136 Da PI: 6.6757 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.9 | 6.6e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++ a +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ Neem_5527_f_1 7 VPPGFRFHPTDEELVDYYLRKKVTSRRIDL-DVIKDVDLYKIEPWDLQEicRIGAdDQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIY 101 69****************************.9***************954555553555************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Neem_5527_f_1 102 S-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 *.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-60 | 5 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.639 | 7 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-29 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MNAFSHVPPG FRFHPTDEEL VDYYLRKKVT SRRIDLDVIK DVDLYKIEPW DLQEICRIGA 60 DDQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQAKFRHY EEGWVVCRVF KKRITTMRKV SEHESPCWYD 180 DQVSFMQDLD SPKPNSQTNL AYHLPYGCKK ELDLQYQVPH EHFLQLPLLE SPKLLQTAST 240 VNCSSFAAYG LDINHASTVQ SSSLTHEEPM HQTHEQNLHP FYGRDNNEQA VDQVTDWRVL 300 DKFVASQLSQ EDASKANNYS NAANNLFRAN EQTNILVSQL NKQEIVPENA STSTSSCQID 360 LWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 6 | 163 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605215 | 6e-80 | KR605215.1 Manihot esculenta NAC transcription factors 77 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286549.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-149 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A438DXA9 | 0.0 | A0A438DXA9_VITVI; NAC domain-containing protein 7 | ||||
STRING | EOY22909 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2111 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-127 | NAC 007 |
Publications ? help Back to Top | |||
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