PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5458_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 202aa MW: 19990.1 Da PI: 8.8661 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 61.9 | 1.2e-19 | 2 | 34 | 29 | 61 |
zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkks 61 Pr+fCk+CrryWt+GG+lr++PvGgg+rkn k+ Neem_5458_f_1 2 PRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKR 34 9****************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-12 | 1 | 33 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 17.634 | 1 | 33 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-15 | 2 | 33 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MPRHFCKSCR RYWTHGGTLR DIPVGGGTRK NAKRCRTVTS TTSNITGNGS AGQDYPLHAT 60 PVLVPFQGAS AQFCGANLKG NNSSVGVCGN GSSSFASLLN PQAPGFLALG GFGLGLGSGF 120 VGDVGFAGLG RGVWGLTGVG DVGASVGANV GGGGNGNSNG GAGGMGNNAW QFENGEGTTS 180 FGGADCFAWP DLAISTPGNG LK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC212845 | 3e-47 | AC212845.1 Populus trichocarpa clone POP021-P21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425808.1 | 2e-67 | dof zinc finger protein DOF3.4 | ||||
Refseq | XP_006466668.1 | 2e-67 | dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A067GIA8 | 6e-67 | A0A067GIA8_CITSI; Uncharacterized protein | ||||
STRING | XP_006466668.1 | 8e-67 | (Citrus sinensis) | ||||
STRING | XP_006425808.1 | 8e-67 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2286 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 9e-23 | OBF binding protein 1 |