PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5447_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 381aa    MW: 44178.7 Da    PI: 5.0833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5447_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-1568115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
    Neem_5447_f_1  68 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 115
                      79******************************99************97 PP

2Myb_DNA-binding50.93.7e-16125165547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
    Neem_5447_f_1 125 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 165
                      6779**************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.83465115IPR017930Myb domain
SMARTSM007174.2E-1267117IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-2667162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-1967114IPR009057Homeodomain-like
PfamPF002492.6E-1468115IPR001005SANT/Myb domain
CDDcd001673.66E-870115No hitNo description
Gene3DG3DSA:1.10.10.603.0E-24115170IPR009057Homeodomain-like
PROSITE profilePS5129425.609116170IPR017930Myb domain
SMARTSM007173.8E-14120168IPR001005SANT/Myb domain
PfamPF002496.0E-14125165IPR001005SANT/Myb domain
CDDcd001675.13E-10128166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTIFASHRST WDHFYFVWRQ AAEYSVLFFF LNPTLQMQAK QRKVDEVALS ENDVARVITR  60
CLYLFTRKGP WTAEEDKKLI NFILTNGQCC WRAVPKLAGL LRCGKSCRLR WTNYLRPDLK  120
RGLLSEYEEK MVIDLHAQLG NRWSKIASHL PGRTDNEIKN HWNTHIKKKL RKMGIDPLTH  180
KPLSTIEQPQ KQPPQMQNQE EEQQLQPQGS SLMINAMSET EQNKEPETCL RSSITEVKEE  240
DKSTRSSFDT TMEIMNNSFC TDDVPLIQPH EILVPCLPTT STTTTTSSSS CSSNSSENSS  300
KFLEEWQFPD FEWPACDYVN NNNNNINSIE NIGLWDEDFS SWDLLINDDE DGDRKLAFVD  360
PPFSQCPRMD LDQDSWKFGL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26681707108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0086649e-34KF008664.1 Scutellaria baicalensis MYB15 (myb) mRNA, partial cds.
GenBankLN6862839e-34LN686283.1 Cucumis melo genomic scaffold, unassembled_sequence33761.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482113.11e-137transcription factor MYB20
SwissprotQ9C7U71e-90MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A067EIR91e-135A0A067EIR9_CITSI; Uncharacterized protein
STRINGXP_006482113.11e-137(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.12e-86myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]