PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5447_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 381aa MW: 44178.7 Da PI: 5.0833 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 68 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ + G +W+++++ g+ R++k+c++rw +yl Neem_5447_f_1 68 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 115 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.7e-16 | 125 | 165 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ Neem_5447_f_1 125 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 165 6779**************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.834 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-12 | 67 | 117 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.24E-26 | 67 | 162 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-19 | 67 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-14 | 68 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.66E-8 | 70 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 115 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.609 | 116 | 170 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-14 | 120 | 168 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 125 | 165 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.13E-10 | 128 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MTIFASHRST WDHFYFVWRQ AAEYSVLFFF LNPTLQMQAK QRKVDEVALS ENDVARVITR 60 CLYLFTRKGP WTAEEDKKLI NFILTNGQCC WRAVPKLAGL LRCGKSCRLR WTNYLRPDLK 120 RGLLSEYEEK MVIDLHAQLG NRWSKIASHL PGRTDNEIKN HWNTHIKKKL RKMGIDPLTH 180 KPLSTIEQPQ KQPPQMQNQE EEQQLQPQGS SLMINAMSET EQNKEPETCL RSSITEVKEE 240 DKSTRSSFDT TMEIMNNSFC TDDVPLIQPH EILVPCLPTT STTTTTSSSS CSSNSSENSS 300 KFLEEWQFPD FEWPACDYVN NNNNNINSIE NIGLWDEDFS SWDLLINDDE DGDRKLAFVD 360 PPFSQCPRMD LDQDSWKFGL L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 68 | 170 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF008664 | 9e-34 | KF008664.1 Scutellaria baicalensis MYB15 (myb) mRNA, partial cds. | |||
GenBank | LN686283 | 9e-34 | LN686283.1 Cucumis melo genomic scaffold, unassembled_sequence33761. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006482113.1 | 1e-137 | transcription factor MYB20 | ||||
Swissprot | Q9C7U7 | 1e-90 | MYB20_ARATH; Transcription factor MYB20 | ||||
TrEMBL | A0A067EIR9 | 1e-135 | A0A067EIR9_CITSI; Uncharacterized protein | ||||
STRING | XP_006482113.1 | 1e-137 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 2e-86 | myb domain protein 43 |
Publications ? help Back to Top | |||
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