PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5444_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 585aa MW: 66816.3 Da PI: 6.4731

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5444_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.5	3.4e-26	73	159	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YAk +GFsvrk+ ++sk +g++++r+++Cs+eg+r++++++ ++ +++r+etrtgC a++ ++++ dgk++vt++e +HnH+ Neem_5444_f_3 73 RFYNRYAKLLGFSVRKDWANRSKIHGQVVSRKYTCSREGHRRKDRRD-TNVKKHRKETRTGCLAHMIITRQPDGKYRVTHFEANHNHD 159 5*****************************************999.99999********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-23	73	159	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.94	259	295	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-4	260	295	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-5	270	297	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MNKDDSDLGS PHDMIMDNRF QTSNELDLNV EQGSRSPIVV NATLSTLSSK DDANVDGILR 60 IGTEFESDEH AYRFYNRYAK LLGFSVRKDW ANRSKIHGQV VSRKYTCSRE GHRRKDRRDT 120 NVKKHRKETR TGCLAHMIIT RQPDGKYRVT HFEANHNHDN IDPNNAQTFL LQKELFVDQA 180 PEIGLPNNLE LQSNTDSDLM SRRFEVRDAL DFLAIDYDIS LRSERREYEK CLNVVVNMYS 240 QSTSLSEYRV NTFGQSREYR VMFNSSDNTV VCDCMKFEYV GFLCSHALKV LDHRNIKVVP 300 SRYILNRWTK DARIGSVKEN SEFMEHENPK LVAARRYKDL CARILNISAR AADSEEAFLF 360 ASRQLEEVIE GVEKILTLKA EEAQGITSSS TGANASESEN AEIFLDENTI EDQGEENRLQ 420 GAREQESSVP DRHKLKSING RSCKSKRVQS IQAQSANTAT CISSPAPAYI SPQAPTTNPV 480 VQSLYTFEAN QVVQCMYTQP NLLIDQHSNT EMYQQPNFFS DQHHSPGQTQ LLHEPLVRGT 540 YHDSVPNTTH LRQAMDLDMQ HPNSSSYLVY DHRYGASDPS YLVPK

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MNKDDSDLGS PHDMIMDNRF QTSNELDLNV EQGSRSPIVV NATLSTLSSK DDANVDGILR  60
IGTEFESDEH AYRFYNRYAK LLGFSVRKDW ANRSKIHGQV VSRKYTCSRE GHRRKDRRDT  120
NVKKHRKETR TGCLAHMIIT RQPDGKYRVT HFEANHNHDN IDPNNAQTFL LQKELFVDQA  180
PEIGLPNNLE LQSNTDSDLM SRRFEVRDAL DFLAIDYDIS LRSERREYEK CLNVVVNMYS  240
QSTSLSEYRV NTFGQSREYR VMFNSSDNTV VCDCMKFEYV GFLCSHALKV LDHRNIKVVP  300
SRYILNRWTK DARIGSVKEN SEFMEHENPK LVAARRYKDL CARILNISAR AADSEEAFLF  360
ASRQLEEVIE GVEKILTLKA EEAQGITSSS TGANASESEN AEIFLDENTI EDQGEENRLQ  420
GAREQESSVP DRHKLKSING RSCKSKRVQS IQAQSANTAT CISSPAPAYI SPQAPTTNPV  480
VQSLYTFEAN QVVQCMYTQP NLLIDQHSNT EMYQQPNFFS DQHHSPGQTQ LLHEPLVRGT  540
YHDSVPNTTH LRQAMDLDMQ HPNSSSYLVY DHRYGASDPS YLVPK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445005.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X3
Refseq	XP_006491138.1	0.0	protein FAR1-RELATED SEQUENCE 12-like isoform X2
TrEMBL	V4U2J1	0.0	V4U2J1_9ROSI; Uncharacterized protein
STRING	XP_006491138.1	0.0	(Citrus sinensis)
STRING	XP_006445005.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	7e-20	FAR1 family protein