PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5372_f_12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HB-other | ||||||||
Protein Properties | Length: 195aa MW: 22883.3 Da PI: 6.7798 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.5 | 1.2e-09 | 122 | 157 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ Neem_5372_f_12 122 YKWPYPSETEKLALAESTGLDQKQINNWFINQRKRH 157 5679*****************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.005 | 97 | 160 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.52E-20 | 98 | 172 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-12 | 99 | 164 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-28 | 102 | 163 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.77E-13 | 109 | 161 | No hit | No description |
Pfam | PF05920 | 9.8E-17 | 117 | 156 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 135 | 158 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MWEMPYKRII RFAILCALGC WVVMTHSKMN YLICITNLCY GQVLMLQFMH FFFDNLTDEK 60 CEGVGSSEED QDNSGGEAEL PEIDPRAEDR ELKNTPLSKK KKKGKLPKEA RQKLLSWWEL 120 HYKWPYPSET EKLALAESTG LDQKQINNWF INQRKRHWKP SEDMQFMVMD GLHPQNAALY 180 MDGHYMGDGP YRLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007018399.1 | 2e-83 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 1e-77 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A061FMA1 | 4e-82 | A0A061FMA1_THECC; KNOTTED-like from | ||||
STRING | EOY15624 | 7e-83 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6566 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 2e-69 | KNOTTED-like from Arabidopsis thaliana |