PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_524_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HSF | ||||||||
Protein Properties | Length: 345aa MW: 39252.9 Da PI: 4.9593 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 118.1 | 5.1e-37 | 45 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sws+ g sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F++g+++ll++ik Neem_524_f_1 45 FLSKTYEMVDDPNTNHIVSWSRGGGSFVVWDPHAFSTDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFSNEGFRRGQRHLLKSIK 132 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Neem_524_f_1 133 RRKA 136 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-40 | 41 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.9E-63 | 41 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.25E-38 | 41 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-33 | 45 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-20 | 45 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-20 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 84 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-20 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MNPFYIVKEE YPGASSSQLG DDRRPAMMPP PQPKEGLHDT GPPPFLSKTY EMVDDPNTNH 60 IVSWSRGGGS FVVWDPHAFS TDLLPRYFKH NNFSSFVRQL NTYGFRKIDP DRWEFSNEGF 120 RRGQRHLLKS IKRRKAPSQP LPPPQALGPC VEVGRFGLDG EVERLNTRAY LQAMEQRLQG 180 TEKKQQQMMS FLARAMQNPA FLQQLVQQKE KRKELEEAMT KKRRRPIDQG PIGAVGGESS 240 RSGEGMNSIK SEPLEYGDYG FGMSELEALA LEMQGYGRTR REREEGQEEI VPPESGDREL 300 DEGFWEELLN ERFEGELDIP GDEGCDDEDV NGLADRFGYL GSSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-24 | 43 | 134 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 2e-24 | 43 | 134 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 43 | 134 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 43 | 134 | 27 | 129 | Heat shock factor protein 1 |
5hdg_A | 1e-24 | 43 | 134 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 1e-24 | 43 | 134 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 1e-24 | 43 | 134 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 1e-24 | 43 | 134 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 1e-24 | 43 | 134 | 8 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 133 | LKSIKRR |
2 | 210 | 224 | KRKELEEAMTKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479647.1 | 0.0 | heat stress transcription factor A-7a | ||||
Refseq | XP_006479648.1 | 0.0 | heat stress transcription factor A-7a | ||||
Refseq | XP_024044201.1 | 0.0 | heat stress transcription factor A-7a | ||||
Swissprot | Q9LUH8 | 1e-110 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A2H5PTQ9 | 0.0 | A0A2H5PTQ9_CITUN; Uncharacterized protein | ||||
STRING | XP_006479647.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443978.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-107 | heat shock transcription factor A6B |