PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5226_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 1042aa    MW: 116898 Da    PI: 8.4563
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5226_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.39.5e-92383951355
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lLl+cA++ ssg+l++a+++L ++ +l+s +gd+mqRlaa f+ ALa rl++ +++lykal+  +  +    +  +a+  f +++P+l fs+ 
  Neem_5226_f_2  38 LIQLLLTCAKHASSGNLHRADECLRQITQLSSVTGDSMQRLAARFASALAIRLVKRWPGLYKALNQPKPGP----D--QARPHFTKAFPYLAFSYA 127
                    689*************************************************************7777753....3..355679************ PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    +  +++l+ v  e  +HiiD++  ++  W+++l+++++ p+++p l++T +++    +k+ l ++g++L k A++ ++pf+fn+ +  +l dl+++
  Neem_5226_f_2 128 IVSRTLLRLVTVEPVIHIIDLGCCEPKFWVPILRSFSTLPNETPYLKVTCINE----NKQVLDKLGRKLVKEADAQNMPFQFNP-ININLRDLTID 218
                    *****************************************************....9**************************.5889******* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                    +L+v++gEala  +vl+lh ll              ++s +  ++   +L +++s+sPk++ +veqeadhn +++++rf+e l+yysa+fds++++
  Neem_5226_f_2 219 MLKVRSGEALALISVLNLHVLLeeddrvdahfgakkSDSFKECKQMGPFLAMLRSISPKLFFLVEQEADHNLNRLVDRFVEGLHYYSAIFDSIDVT 314
                    *********************************977556666668999************************************************ PP

           GRAS 275 lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                    +++++ eer  +E++ +grei+ +va+eg er+erhe++++W  r+++aGFkpv+l  + +++ak +++ ++ dgy++ +e+
  Neem_5226_f_2 315 FGSKDsEERLILEAM-FGREIEHIVANEGLEREERHERYARWMVRFGRAGFKPVQLWVNPMEDAKQMVKAYGRDGYKIVNEK 395
                    998884777777777.*************************************************************99775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.69512394IPR005202Transcription factor GRAS
PfamPF035143.3E-8938395IPR005202Transcription factor GRAS
SuperFamilySSF533352.41E-110465506IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE profilePS51626137.231466928IPR002905tRNA methyltransferase, Trm1
TIGRFAMsTIGR003083.2E-95468930IPR002905tRNA methyltransferase, Trm1
PfamPF020053.2E-117469929IPR002905tRNA methyltransferase, Trm1
Gene3DG3DSA:3.40.50.1502.1E-11580690IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.41E-110583786IPR029063S-adenosyl-L-methionine-dependent methyltransferase
CDDcd024400.00102585687No hitNo description
SuperFamilySSF533352.41E-110813930IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0004809Molecular FunctiontRNA (guanine-N2-)-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MNSSSSSLKP DVTLSLTLSP CPSPRDQGMK PEERGVKLIQ LLLTCAKHAS SGNLHRADEC  60
LRQITQLSSV TGDSMQRLAA RFASALAIRL VKRWPGLYKA LNQPKPGPDQ ARPHFTKAFP  120
YLAFSYAIVS RTLLRLVTVE PVIHIIDLGC CEPKFWVPIL RSFSTLPNET PYLKVTCINE  180
NKQVLDKLGR KLVKEADAQN MPFQFNPINI NLRDLTIDML KVRSGEALAL ISVLNLHVLL  240
EEDDRVDAHF GAKKSDSFKE CKQMGPFLAM LRSISPKLFF LVEQEADHNL NRLVDRFVEG  300
LHYYSAIFDS IDVTFGSKDS EERLILEAMF GREIEHIVAN EGLEREERHE RYARWMVRFG  360
RAGFKPVQLW VNPMEDAKQM VKAYGRDGYK IVNEKAITGA RKLRRNLFLT RSKTRQGFLF  420
FFLQSVSSVS NQRIKERRRE EEETQKLKVH AKEEIGGSME DLNDYTIIKE GEAEILMHAK  480
NEVFYNKTQV NNRDISIAVL RTFISKRKEE HEAVLLKRTT ATPKVSEKDA VQEAPDKSDS  540
VANDEKSNGE VERSEGMCED EACGTSEEPT KTTERKGPGQ LKPPRVLEAL SASGLRALRY  600
AREVEGISQV VALDNDKVSV EACRRNIKFN GSVACSKVES HFADARVYML THPKEFDVVD  660
LDPYGSPSVF LDSAVQSVVD GGMLMCTATD MAVLCGGNGE VCYSKYGSYP LRGKYCHEMA  720
LRILLACIES HANRYKRYIV PVLSVQMDFY VRVFVRIYTS ASAMKNTPLK LSYVYQCIGC  780
DSFHLQPLGR TASNKNNSVR YLPGFGPVVP QACSDCGKKF NMGGPIWSAP IHDQEWVTSI  840
LLDVKSMKDR YPAYDRISAV LTTISEELPD VPLFLSLHNL CATLKCTSPS AVMFRSAVIN  900
AGYHISGTHV NPLGLKSDAP MDVIWDIMRC WVKNHPVKAQ PPDQPGSVIL AKEPTLQANF  960
ARAVASLSKA QAKKVARFLP NPERHWGPKL RAGRQITSKH ISLLGPEAVN GHLSLEDAEE  1020
PDAKRQKTEE DPTPNSRDEV IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dul_A2e-4458192946376N(2),N(2)-dimethylguanosine tRNA methyltransferase
2ejt_A2e-4458192946376N(2),N(2)-dimethylguanosine tRNA methyltransferase
2eju_A2e-4458192946376N(2),N(2)-dimethylguanosine tRNA methyltransferase
2ytz_A2e-4458192946376N(2),N(2)-dimethylguanosine tRNA methyltransferase
2ytz_B2e-4458192946376N(2),N(2)-dimethylguanosine tRNA methyltransferase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482428.10.0probable tRNA (guanine(26)-N(2))-dimethyltransferase 2
SwissprotQ9SRU70.0TRM2_ARATH; Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2
TrEMBLA0A2H5P1P20.0A0A2H5P1P2_CITUN; tRNA (guanine(26)-N(2))-dimethyltransferase
STRINGXP_006482428.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.18e-84scarecrow-like 3
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]