PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5183_f_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 25383.3 Da PI: 4.4986 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.6 | 1.1e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrr+C++dC++apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++e++ Neem_5183_f_7 7 SCGACKFLRRRCTNDCIFAPYFCYDQaATHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITISYEALARMRDPIYGCVAHIFALQQQVANLQEEIE 102 6************************9789******************************************************************9 PP DUF260 96 llkee 100 +l+++ Neem_5183_f_7 103 VLENH 107 98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.725 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRRCTN DCIFAPYFCY DQAATHFAAV HKVFGASNVS KLLLHLPVQN 60 RSDAAITISY EALARMRDPI YGCVAHIFAL QQQVANLQEE IEVLENHMAN HLIGVVYGGN 120 SQAPNEPCDQ SYFSPDLDAM NTLYYQNQQP DQLLLNHEGN INVSQAFGGQ MNTELPSLQG 180 WEEQNFLPDS SPNDALRTLD GMDQENFVYK PWFDINGNAA NLRDPTW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 3 | 124 | 7 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 3 | 124 | 7 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316271.2 | 2e-95 | LOB domain-containing protein 29 | ||||
TrEMBL | A0A2H5Q362 | 1e-128 | A0A2H5Q362_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TGP2 | 1e-128 | V4TGP2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006435636.1 | 1e-129 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 3e-58 | LOB domain-containing protein 33 |