PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5122_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 279aa    MW: 30663.8 Da    PI: 5.2457
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5122_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-192575155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   s++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Neem_5122_f_1 25 SRFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 75
                   6788******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-312582No hitNo description
SuperFamilySSF541711.96E-212584IPR016177DNA-binding domain
SMARTSM003801.2E-342689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-292683IPR001471AP2/ERF domain
PROSITE profilePS5103220.7842683IPR001471AP2/ERF domain
PfamPF008473.4E-122775IPR001471AP2/ERF domain
PRINTSPR003673.5E-82738IPR001471AP2/ERF domain
PRINTSPR003673.5E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNSSSSKSKK KQTQAQDASN TGGSSRFLGV RRRPWGRYAA EIRDPSTKER HWLGTFDTAE  60
EAALAYDRAA RSMRGPRART NFVYSDMPAG SSVTSIISPD EQQSLQHHSF SSSFHVPSTQ  120
SEPNLQSILS QDHTTNNNNI NSHFSSGYST ISDTDFYSNN YQRASNIDSN GLSSYSYSSE  180
LPPLPCNISD YSGYSDSSVI TSSYDNMGTQ GDWNESSTNL MGFSEQSSMT NGFETMGNGS  240
YFSSDSNTYV HSPLFSSMPP VSDTIPDGFH LGSSSNYFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-202782359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951335.12e-98ethylene-responsive transcription factor LEP
TrEMBLV4U2Q69e-97V4U2Q6_9ROSI; Uncharacterized protein
STRINGXP_006469113.19e-98(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.16e-34ERF family protein