PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5100_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 234aa    MW: 26442 Da    PI: 4.5098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5100_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-081443129
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIar 29
                     +g+W++eEd +l+d+++++G+g +W + ++
    Neem_5100_f_2 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPQ 43
                     79********************99976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-10543IPR009057Homeodomain-like
SuperFamilySSF466891.55E-6846IPR009057Homeodomain-like
PROSITE profilePS500907.073956IPR017877Myb-like domain
PfamPF002491.4E-61442IPR001005SANT/Myb domain
CDDcd001678.55E-51651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPQKADCTYY YTPAKSFSSF  60
DSFEPISSNI PLHLLNNNTC VATSSSQFQI QENQLVSSMQ YYPLKENFLT FGSEPSCSSS  120
DGSCSQISYG REVKQEDMVF QGYYSNGFEE NHKFMLSYGN SNSNCHGGEN LNQWTEKPNG  180
YFGETPSSDY TLEDVKQLIS CSSINGCNND NINLFSVADE NKIQEKIMYH YFNY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4493142e-39AM449314.2 Vitis vinifera contig VV78X266403.66, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022756573.17e-49transcription factor RAX2-like
TrEMBLA0A067FAN83e-46A0A067FAN8_CITSI; Uncharacterized protein
TrEMBLA0A2H5QQQ73e-46A0A2H5QQQ7_CITUN; Uncharacterized protein
TrEMBLV4UEI63e-46V4UEI6_9ROSI; Uncharacterized protein
STRINGXP_006488026.14e-47(Citrus sinensis)
STRINGXP_006424474.14e-47(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1757738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-26myb domain protein 36