PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_5060_f_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22459.4 Da PI: 9.3173 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.7 | 1.9e-19 | 2 | 94 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ C+l+ + p++q +++ +++k+FG+s +l++++a+pe++r+ A+ r+ +Pv Gavg++++++++++q+++e Neem_5060_f_7 2 SCNGCRVLRKGCSETCILRSSLhwidtPEAQGNATLFLAKFFGRSDLLSFIAAVPETQRP---------ACGRTVNPVDGAVGLLSSGNWHICQAAVE 90 6**********************************************************8.........89*************************99 PP DUF260 94 lall 97 ++l Neem_5060_f_7 91 TVLS 94 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.647 | 1 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-15 | 2 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR SSLHWIDTPE AQGNATLFLA KFFGRSDLLS FIAAVPETQR 60 PACGRTVNPV DGAVGLLSSG NWHICQAAVE TVLSGGTLRP ITGVYNSGVI RPNSEENYVN 120 AYMAKNQPPQ SKPLILKDGR DQHRKSDTDP SPATKFGGTG KRGRARRINA MSFYSEESEM 180 TSFESGGSDE TKKRGNQEKK LLNLFV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600875.1 | 7e-79 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SZE8 | 3e-55 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2C9U0K7 | 2e-77 | A0A2C9U0K7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016184m | 3e-78 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-57 | LOB domain-containing protein 39 |