PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_504_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARR-B
Protein Properties Length: 680aa    MW: 74573.1 Da    PI: 5.2843
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_504_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.21.2e-25212261151
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                   kpr++W+ eLH++Fv+av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQ
  Neem_504_f_6 212 KPRVVWSVELHRKFVNAVNQL-GLDKAVPKKILDLMNVDGLTRENVASHLQ 261
                   79*******************.***************************** PP
2Response_reg821.9e-27261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l+k +y +v+ + ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + +  Ga 
  Neem_504_f_6  26 VLAVDDDPICLKVLESLLRKCQY-QVTITNQAVTALKMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHGAC 120
                   799********************.***************999889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
  Neem_504_f_6 121 DYLLKPVRIEELKN 134
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.9E-1651680IPR017053Response regulator B-type, plant
SuperFamilySSF521723.13E-3623147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-4323161No hitNo description
SMARTSM004483.0E-3424136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.7325140IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.4E-2526134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.61E-2927140No hitNo description
SuperFamilySSF466892.87E-16209263IPR009057Homeodomain-like
PROSITE profilePS5129410.374209268IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-25209261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22212262IPR006447Myb domain, plants
PfamPF002491.9E-6214261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MTVEDKMGVS SGEDGATDKF PIGMRVLAVD DDPICLKVLE SLLRKCQYQV TITNQAVTAL  60
KMLRENRNKY DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVI RRKKIDPKDQ NKSPSQENAH VEAGESGQGA TSTGYSDQNG  180
KSNRKRKDQN EDDDEEVDDD GNENEDSTTQ KKPRVVWSVE LHRKFVNAVN QLGLDKAVPK  240
KILDLMNVDG LTRENVASHL QAMIFSSNSL ISKTLKYRLY LKRISNVATQ QGGMVAALGS  300
KDSSYLRMGS LDGFEDFRSL NSPGRISSPT LSSYTPGGML GRLNSTAGLT IRGIASSGMI  360
QPGHSQTLNN SFNTFGKIQQ AILPANPSSS MFQGVTQLPQ SKSSTHIGGD FNHINDPTAF  420
TLARVTLGSS SSCVSGVSSN PLMFQANPQQ AQSRGPFGNP SSLNVTSLNP ETFDIGVRGS  480
SNFLDHSRSD DSWQSAVQLP KFPSNSLPLS ESFSHDHHIA SNPLDISSSM PTSTALEDSR  540
EDMSCQAGLI GNVVQNYTPK QHWEEHRQDY NNQNLNNSFS AVNSLASSNC TMGPFSQSMD  600
QGNAPYTVQH TDVEKSSSEM KQRSNDDYLL EQSKSPDGFI QNNYDSLDDI MSAMIKRDPS  660
ETLLMDGELG FDAYSLGSCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22208285164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453634.10.0two-component response regulator ORR24
TrEMBLV4WJC40.0V4WJC4_9ROSI; Two-component response regulator
STRINGXP_006453634.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-122response regulator 12