PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4983_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 399aa    MW: 44689.3 Da    PI: 5.5887
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4983_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.67e-21431593127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                    +G rF+Ptde l  +yL+ kv+g++    +++ ++ d +     ++      ++  +yfF+  + ky++g   nr++ +g+Wk+tgk+ +v  ++g
  Neem_4983_f_1  43 VGRRFRPTDEILARHYLAGKVSGRTDGRiFSCYQRRDAH-----KF------RDGIMYFFTYLKMKYHNGAIVNRVAGDGFWKKTGKSSHVNGEDG 127
                    699********************9943302223333332.....33......45678*************************************** PP

            NAM  98 elvglkktLvfy.kg.rapkgektdWvmheyr 127
                      + +k+ L++y +g +  +++kt+W+m+e++
  Neem_4983_f_1 128 VPIATKTALAYYmNGqKPGESTKTQWLMKEFT 159
                    ************5332555778********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.98341179IPR003441NAC domain
SuperFamilySSF1019416.54E-2442177IPR003441NAC domain
PfamPF023654.6E-1443159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MASSATRAAE VSSQSTAVEE KDAVVNTAPG IYFPINPQSL PIVGRRFRPT DEILARHYLA  60
GKVSGRTDGR IFSCYQRRDA HKFRDGIMYF FTYLKMKYHN GAIVNRVAGD GFWKKTGKSS  120
HVNGEDGVPI ATKTALAYYM NGQKPGESTK TQWLMKEFTP EGQIAEKFKT IALCVIYDLH  180
DRKRKQRGQS DEKVLFDDIV EGSFQNLASD SYCDRQNLIM PSAENPDSPR KRHRPSNPDF  240
HVQDEGSFTP EFNSSSNPAA THESFPAGPI QSANSYQIPL NTVMEPQDTV ATEPNEHIPY  300
NYSSHFTDFE NYYQPEHQLS ELSTDNPDFN QSQDTSDPEF NASSNPSATR EILPEVTIKA  360
ANSKQNLSNM AIESQGATDT NTSILNCWSP SDFLNHDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-133417711163NO APICAL MERISTEM PROTEIN
1ut4_B8e-133417711163NO APICAL MERISTEM PROTEIN
1ut7_A8e-133417711163NO APICAL MERISTEM PROTEIN
1ut7_B8e-133417711163NO APICAL MERISTEM PROTEIN
3swm_A8e-133417714166NAC domain-containing protein 19
3swm_B8e-133417714166NAC domain-containing protein 19
3swm_C8e-133417714166NAC domain-containing protein 19
3swm_D8e-133417714166NAC domain-containing protein 19
3swp_A8e-133417714166NAC domain-containing protein 19
3swp_B8e-133417714166NAC domain-containing protein 19
3swp_C8e-133417714166NAC domain-containing protein 19
3swp_D8e-133417714166NAC domain-containing protein 19
4dul_A8e-133417711163NAC domain-containing protein 19
4dul_B8e-133417711163NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2128435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.14e-16NAC family protein