PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4942_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family SRS
Protein Properties Length: 287aa    MW: 30602.3 Da    PI: 8.3648
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4942_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702153.91.1e-471162524142
         DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 
                     +++CqdCGnqakkdCah+RCRtCCksrgfdCathvkstW+ aa                 ++ +++  k++r l s++++++s+t++s+++++++
  Neem_4942_f_3 116 SGTTCQDCGNQAKKDCAHRRCRTCCKSRGFDCATHVKSTWLMAAAATVA-----------GSAGSTSGIKKPRLL-SSQTTTTSHTSTSNTTPPRS 199
                    5679*************************************99876542...........222244556666654.66666777777777777777 PP

         DUF702 100 letss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhv 142
                    ++tss          lP +v+++avf+cvrv++v+dge+e+aYq++v+igGh+
  Neem_4942_f_3 200 FDTSSshqdatfketLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHL 252
                    777777777777777*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.7E-43117252IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-25119160IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.9E-21215252IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MPAPRLPLSP PHLPLLPPAP PPGPPPLAPL TTAFLLTWAW LNMEDQDLLN NGRNKVSQIQ  60
FWQNQNSNQY LKKASATVLD HHNNSSSLNL IQSGSISAGG NNSNNTSIGG GSGSSSGTTC  120
QDCGNQAKKD CAHRRCRTCC KSRGFDCATH VKSTWLMAAA ATVAGSAGST SGIKKPRLLS  180
SQTTTTSHTS TSNTTPPRSF DTSSSHQDAT FKETLPGQVR APAVFKCVRV TAVEDGEDEY  240
AYQAVVKIGG HLVAVSSEVQ AMVFDLFSGP HCYSFWHCTE ANISICR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530898.18e-92protein LATERAL ROOT PRIMORDIUM 1
TrEMBLB9SY292e-90B9SY29_RICCO; Transcription factor, putative
STRINGXP_002530898.13e-91(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-46Lateral root primordium (LRP) protein-related