PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4792_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 454aa MW: 49035.6 Da PI: 8.0538 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 6.9e-11 | 54 | 79 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++rtG C yG++C+F+H+ Neem_4792_f_1 54 PGEPDCLFYLRTGLCGYGSNCRFNHP 79 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.8 | 6.5e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ Neem_4792_f_1 98 QPDCGYYLKTGTCKYGSTCKYHHPK 122 789********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.3e-12 | 144 | 167 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ Neem_4792_f_1 144 KSCPYYMRTGSCKFGVACKFHHPQ 167 66********************97 PP | |||||||
4 | zf-CCCH | 34.6 | 3.1e-11 | 292 | 314 | 2 | 24 |
-S---SGGGGTS--TTTTT-SS- CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFa 24 +++ Cr+f+ tGtCkyG+ CkF+ Neem_4792_f_1 292 DQPDCRYFMNTGTCKYGADCKFH 314 6899******************7 PP | |||||||
5 | zf-CCCH | 34.5 | 3.4e-11 | 337 | 362 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++C+F H+ Neem_4792_f_1 337 PGQAICSNYSMYGICKFGPTCRFDHP 362 5789*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.291 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 55 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 58 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 59 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-9 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 101 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 139 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.352 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 143 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 145 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.831 | 290 | 318 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0044 | 290 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 292 | 314 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-5 | 296 | 313 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 336 | 364 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 336 | 362 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 336 | 363 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-8 | 338 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MNSVPPMPDN RQVKSNAVSN QSADNIEEAI WRLKIHDSQE GGGVAQSSPY PDRPGEPDCL 60 FYLRTGLCGY GSNCRFNHPA YAAQGTQYRE ELPERVGQPD CGYYLKTGTC KYGSTCKYHH 120 PKDRNGAGPV SFNLLGLPMR QDEKSCPYYM RTGSCKFGVA CKFHHPQPSS VGTGLPVTGS 180 ASFGSMGSSV LPSSGLPYAG SLPTWSLPRS PYLSGPRLQG SQSYMPVIVS PSQGLVPAPG 240 WNTYMGNIGP VSPSSIAGSN LIYSSRNPSD LSTGGQVHML ATSSPNLPER PDQPDCRYFM 300 NTGTCKYGAD CKFHPPKERI AQSAASNVGP LGLPSRPGQA ICSNYSMYGI CKFGPTCRFD 360 HPYAGYPFNY GLSLPPLSIL DSPLMTHQAV PTTHSSDRSP IMSSKIPNWV QNSDAESMKH 420 QNTTTKNSDN SSEVDHSPTQ SVQNSSDHSH NQSN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447662.1 | 0.0 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_006469597.1 | 0.0 | zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A067F8M6 | 0.0 | A0A067F8M6_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PS58 | 0.0 | A0A2H5PS58_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U4N8 | 0.0 | V4U4N8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469597.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447662.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-128 | C3H family protein |