PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4729_f_9
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 258aa    MW: 29398.1 Da    PI: 6.516
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4729_f_9genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-18855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed llv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
    Neem_4729_f_9  8 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding51.72e-1661106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
    Neem_4729_f_9  61 RGKMNPQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                      8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.624355IPR017930Myb domain
SuperFamilySSF466891.14E-296102IPR009057Homeodomain-like
SMARTSM007177.2E-16757IPR001005SANT/Myb domain
PfamPF002492.1E-16855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-21962IPR009057Homeodomain-like
CDDcd001672.97E-111055No hitNo description
PROSITE profilePS5129426.42556110IPR017930Myb domain
SMARTSM007173.3E-1660108IPR001005SANT/Myb domain
PfamPF002498.2E-1561105IPR001005SANT/Myb domain
CDDcd001673.93E-1163106No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2363109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVQEEIRKGP WTEQEDILLV NFVQLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGKMNPQEER LVLELHAKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKRAISPS  120
SSSSNCSSSS TVTAVDSLPC SAPGKASFYD TGGHDVIAAL AGKKISEQVE EYETGYSMDD  180
IWKDIELSVE NTIKPVCDGY SEEGCNFACP SIASPSWDYC WDSLWKIDEE ESKMMINLPG  240
DQLIYSSNEF GRDANLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2851101105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016524.21e-130PREDICTED: transcription factor MYB59 isoform X1
SwissprotQ9LX821e-102MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A061GXJ91e-129A0A061GXJ9_THECC; Myb domain protein 59 isoform 2
STRINGEOY341421e-126(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-101myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]