PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4688_a_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ERF | ||||||||
Protein Properties | Length: 150aa MW: 17438.8 Da PI: 4.7278 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.2 | 3.5e-07 | 19 | 38 | 2 | 22 |
AP2 2 gykGVrwdkkrgrWvAeIrdp 22 +y+GVr+++ +g+++AeIrd Neem_4688_a_2 19 RYRGVRRRP-WGKFAAEIRDS 38 6********.**********3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.0011 | 19 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.283 | 19 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-5 | 19 | 42 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-8 | 19 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 60 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MEEDQRRKVK EEQETTNVRY RGVRRRPWGK FAAEIRDSTR HGAPXXXXXX XXXXXXXXXX 60 XXXXXXXMRG PLAILNFPDE HISSGVXXXX XXXXXXXRAF SSSSFSVFQN EERSGGTDAG 120 KDVFEIEYLD DQLLEDLLSF EDDKNKNNNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-11 | 19 | 150 | 14 | 131 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443854.1 | 4e-32 | ethylene-responsive transcription factor ERF096 | ||||
Refseq | XP_024954058.1 | 4e-32 | ethylene-responsive transcription factor ERF096-like | ||||
TrEMBL | A0A2H5QGW0 | 2e-29 | A0A2H5QGW0_CITUN; Uncharacterized protein | ||||
TrEMBL | V4VUZ4 | 8e-31 | V4VUZ4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006480089.1 | 1e-31 | (Citrus sinensis) | ||||
STRING | XP_006443854.1 | 1e-31 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23220.1 | 1e-13 | ERF family protein |