PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_464_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 270aa MW: 30237.7 Da PI: 9.3125

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_464_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Neem_464_f_4 102 FSCNFCKREFSTSQALGGHQNAH 124 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.75E-6	99	129	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-4	100	128	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.531	102	129	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	104	124	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MKARLFSEAG SSLQASTTSE GMGIINPCMK MKGVVVEASE PKHNINNITE SSSGGTLVLD 60 LKLSNDDHRG DNSKIELNLL SNINATENDN SLEKQPAENR VFSCNFCKRE FSTSQALGGH 120 QNAHKQERAL AKRRHQGIDQ EVATNFGFGN QNFSYYYSPN YSSINSRPHP FYNTSFNKPL 180 GIKMDSMIHK PYNSYPWQSS SSDYRFGLAG LFPRQSLVNP QPSFTERMTM NGFGNFAASR 240 RFGENEVLAT SNDIIQLNKP SRIEFLRRGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432359.1	2e-54	zinc finger protein 3
TrEMBL	V4V1D3	5e-53	V4V1D3_9ROSI; Uncharacterized protein
STRING	XP_006432359.1	9e-54	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20134	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	7e-20	C2H2 family protein