PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4647_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 202aa    MW: 23233 Da    PI: 6.6035
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4647_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1491.4e-1586144563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++  +++ +e+
  Neem_4647_f_4  86 RKQRRMISNRESARRSRMRKQKHLDELWSQVIRLRTENHTLIDKLNHVSECHDRVLQEN 144
                    79*********************************************999877777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-1682146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.57684135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-1386159No hitNo description
SuperFamilySSF579594.34E-1386135No hitNo description
PfamPF001706.0E-1386143IPR004827Basic-leucine zipper domain
CDDcd147021.96E-2087138No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVPGDITGIQ YYLPPENPVP YPANNFGMMH ANIPNFHLNR LLSNLPNSLI PPPGHEFMTT  60
QSSSLSNNSS TSDEAEEQQL RIIDERKQRR MISNRESARR SRMRKQKHLD ELWSQVIRLR  120
TENHTLIDKL NHVSECHDRV LQENARLKEE ASDLRQMLTE LQISSPYTNA SLRDLDELPC  180
NTAHLRAEST SQSITNSVDL LH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437815.11e-112basic leucine zipper 43
RefseqXP_006484292.11e-112basic leucine zipper 43
TrEMBLA0A2H5Q9N81e-111A0A2H5Q9N8_CITUN; Uncharacterized protein
TrEMBLV4THE41e-111V4THE4_9ROSI; Uncharacterized protein
STRINGXP_006484292.11e-112(Citrus sinensis)
STRINGXP_006437815.11e-112(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.17e-46basic leucine-zipper 58