PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4594_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 160aa    MW: 18789.1 Da    PI: 9.4175
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4594_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-071359248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W+ eEd +l+ + +      W+ +++  g+ R+ ++c+ rw+++l
    Neem_4594_f_3 13 GAWSVEEDVRLITYMQNRDRVYWSDVPEAAGLVRSSNSCRTRWLQHL 59
                     79************9999877**********99***********986 PP
2Myb_DNA-binding27.29.4e-0968111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 
                      +T eE+   v++ +     +W+ Iar+++  +Rt++++k +w+++
    Neem_4594_f_3  68 FTLEEENYMVKLYRAGYD-RWTDIARRLPgGKRTANEVKYHWRTV 111
                      666666666666665554.5**********99**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-1610108IPR009057Homeodomain-like
SMARTSM007170.0151161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-141366IPR009057Homeodomain-like
PROSITE profilePS500908.7341359IPR017877Myb-like domain
CDDcd001670.006621459No hitNo description
PfamPF139212.6E-111573No hitNo description
PROSITE profilePS5129411.81160116IPR017930Myb domain
SMARTSM007172.2E-664114IPR001005SANT/Myb domain
CDDcd001671.08E-667112No hitNo description
Gene3DG3DSA:1.10.10.602.4E-1367116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MRSNSPIRTK RLGAWSVEED VRLITYMQNR DRVYWSDVPE AAGLVRSSNS CRTRWLQHLS  60
PDIEHHNFTL EEENYMVKLY RAGYDRWTDI ARRLPGGKRT ANEVKYHWRT VVIRKLLNQN  120
INPITLSTNN ESVSSNHLNE VTVEELNLEL SLRPPGRTQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-151311628128MYB TRANSFORMING PROTEIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.12e-32myb domain protein 32