PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_4442_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 514aa MW: 58213.9 Da PI: 8.3441

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4442_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.5	7.4e-31	75	162	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r++ +++ + +r+r+ tr+gCka+++vkk+++gkw v+kl++eHnHel+p Neem_4442_f_3 75 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRRGNEN--RCKRQRTITRVGCKAQMTVKKQSSGKWAVSKLVKEHNHELVP 162 9**************************************99888..999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-28	75	162	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.039	330	362	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-8	334	360	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-7	337	364	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MEFQPLDIAI GNGVIEYDEV DYSGGEDDSD HPAYYDDLLP VNSTLSNNFE TSNVDPNLEP 60 YEGMEFDSEQ SARIFYNSYA RRIGFSTRVS VYQRSRRDGS IICRQIVCSR EGFRRRGNEN 120 RCKRQRTITR VGCKAQMTVK KQSSGKWAVS KLVKEHNHEL VPPDKVHCLR SHRHVSGPAR 180 SLIDTLQAAG MGPSGVMSVL IKESGGVNNV GFTKVDCQNY MSSSRQRTLG SGGQLELVIG 240 FQYEKAIASR YEKEVKADYD TVNNEPVLRT PSPMEKQAAN HYTRKIFMKF QEELVETLAY 300 PASVVNDEGS KIIYRVAKFE EEHKANFVRY NVFEKKASCC CRMFEFSGII CRHILAVFRV 360 TNVLTLPSHY ILKRWTRNAK SNGNILGLPS NSQESSATRY DNLRQEIIKF VEEGAESAHI 420 YNIAMDALCE AAKKVSAAKN RSPGVTQDTL FNGCQQLQSV DQDKKIHELT VELENASQQC 480 EAYRTKLLAV LKDMEEQKLK MLVKVENVRL NLKG

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MEFQPLDIAI GNGVIEYDEV DYSGGEDDSD HPAYYDDLLP VNSTLSNNFE TSNVDPNLEP  60
YEGMEFDSEQ SARIFYNSYA RRIGFSTRVS VYQRSRRDGS IICRQIVCSR EGFRRRGNEN  120
RCKRQRTITR VGCKAQMTVK KQSSGKWAVS KLVKEHNHEL VPPDKVHCLR SHRHVSGPAR  180
SLIDTLQAAG MGPSGVMSVL IKESGGVNNV GFTKVDCQNY MSSSRQRTLG SGGQLELVIG  240
FQYEKAIASR YEKEVKADYD TVNNEPVLRT PSPMEKQAAN HYTRKIFMKF QEELVETLAY  300
PASVVNDEGS KIIYRVAKFE EEHKANFVRY NVFEKKASCC CRMFEFSGII CRHILAVFRV  360
TNVLTLPSHY ILKRWTRNAK SNGNILGLPS NSQESSATRY DNLRQEIIKF VEEGAESAHI  420
YNIAMDALCE AAKKVSAAKN RSPGVTQDTL FNGCQQLQSV DQDKKIHELT VELENASQQC  480
EAYRTKLLAV LKDMEEQKLK MLVKVENVRL NLKG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.
UniProt	Putative transcription activator involved in regulating light control of development. May act as a negative regulator specific to phyB signaling. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435469.1	1e-148	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_006473867.1	1e-148	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL7	3e-92	FRS9_ARATH; Protein FAR1-RELATED SEQUENCE 9
Swissprot	Q9SZL8	3e-90	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A200PR76	0.0	A0A200PR76_9MAGN; FAR1 DNA binding domain
STRING	XP_006473867.1	1e-147	(Citrus sinensis)
STRING	XP_006435469.1	1e-147	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-92	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]