PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4442_f_13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | SBP | ||||||||
Protein Properties | Length: 1152aa MW: 127584 Da PI: 8.2225 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.4 | 6.5e-41 | 143 | 220 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Neem_4442_f_13 143 MCQVDNCKEDLSNAKDYHRRHKVCEVHSKSSKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 220 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-33 | 138 | 205 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.026 | 141 | 218 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-37 | 142 | 222 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-29 | 144 | 217 | IPR004333 | Transcription factor, SBP-box |
CDD | cd00204 | 3.31E-4 | 849 | 991 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1152 aa Download sequence Send to blast |
MEEVGAQVAP PILMHQTLSS RFCEPPSMAR KRNLSYQNPN FHQHQHQHRA QPRLDNWNPK 60 LWNWDSVGFV AKPAESEAIR LGGAPASEPN KIDKKNITVS VANEDDGRLD LNLAGGLNTV 120 EEPASRPGKR VRSGSPGSAA YPMCQVDNCK EDLSNAKDYH RRHKVCEVHS KSSKALVGKQ 180 MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVTSRLLIP GNQNNATPHP 240 GNLDIVNLLT AFARAQGKSE EKSISCTPVP DRDQLIMILS KINSLPLPAD LAAKLPNIGS 300 SNKKNPEQTP SDFQNRLNLN TSSSSTMDLL AVLSATLATS APDALAMLSQ KSSHGSDSEK 360 TKSSCPDQTT PNFLKRTTLD FPSVGGERSS TSYQSPDSEG QVQETRVNLP LQLFSSSPED 420 DSPPKLSSSR KYFSSDSSNP IEERSPSSSP VMQTLFPMQS TSETVKSEKL SIGKEFNANF 480 AGSQTGGSVM PLELFGSSNK ATDNCSFQSF PYQAGYTSSS GSDHSPSSLN SDAQDSNVVI 540 PPQDRTGRII FKLFDKDPSH FPGTLRKQIY NWLSNSPSEM ESYIRPGCVV LSIYLSMSCA 600 AWEQLEGNLL QNVNSLVQDL DSDFWRKARF LVHTGKQLAS HKEVSAWCLI LLYTDDPNGN 660 GYNSWKIRVC KSWRTWSSPE LISVSPLAVV GGQEISLKLR GRNLTNPGTK IHCTFMGGYA 720 SQEVTGLTCR GTMYDEINLG GLKFQDTCTS VFGRFFVEVE NGFKGNSFPV IIADATICKE 780 LRLLESEFDA EAKICDIISE DQAHDYGRPR SREEVLHFLN ELGWLFQRKR TSSVIEGHIY 840 SFSRFKFLLI FSVERGCCAL VKAILDMLVE GNLTMDGLSR ESFEMLSEIQ LLNRAVKRRC 900 RRMVDLLIHY SITSSSETSP KYIFAPNLAG PGGITPLHLA ASASDSEDVI DALTNDPQEI 960 GLSCWNSLLD AGGQSPYSYA IMRNNHSYNK LVARKLSDKR NGQVSILVGM EIEQPGLTAD 1020 QGHGIKQGRK SCTKCAVVAA KFNRRVRGSQ GLLHRPYIHS MLAIAAVCVC VCLFLRGSPD 1080 IGLVAPFKWE NLDYGPNLEE VFSDCGNVAA AYNTEVKGCR FEVRRGGEIG VACYTLHLKK 1140 MDIYPYRHRI KI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-32 | 134 | 217 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 893 | 898 | RAVKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC015450 | 4e-34 | AC015450.5 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 4e-34 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435483.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2H5PAH8 | 0.0 | A0A2H5PAH8_CITUN; Uncharacterized protein | ||||
STRING | XP_006435483.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3999 | 25 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Publications ? help Back to Top | |||
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