PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_433_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 341aa MW: 37989.7 Da PI: 6.1079

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_433_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.9	4.8e-34	175	233	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers+edp++v++tYeg+H+h+ Neem_433_f_4 175 LDDGYRWRKYGQKAVKNSPHPRSYYRCTTAGCGVKKRVERSSEDPTIVVTTYEGQHTHP 233 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	4.6E-98	1	339	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	7.2E-36	160	235	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-30	167	235	IPR003657	WRKY domain
PROSITE profile	PS50811	33.27	170	235	IPR003657	WRKY domain
SMART	SM00774	7.3E-41	175	234	IPR003657	WRKY domain
Pfam	PF03106	1.4E-27	176	233	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEKKEDSSIS MANSTFSDEN PASSFSLPSI FDISCEGDKW GSNSFGLVDL LNFHNQDFGA 60 ASLFDYPLQQ PPILPPPPQQ QQQQQQQPLP SPASTVPESS EVLNNPATPN SSSISSSSNE 120 AANNNEEQTN SKAGEEEEEQ DQDKTKKQLK PKKKNQKRQR EPRFAFMTKS DVDHLDDGYR 180 WRKYGQKAVK NSPHPRSYYR CTTAGCGVKK RVERSSEDPT IVVTTYEGQH THPSPITPRG 240 NLGIFPTDHS TAFATASPFV VPQPQYLQQQ QQPYIYTASP SLNLTSGTSA APSFINPSFS 300 SFIHDQERRM APRSSPSSLL RDHGLLQDIV PSQMRNEPKE D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	168	235	10	77	Probable WRKY transcription factor 4
2lex_A	2e-27	168	235	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007035842.2	1e-131	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	5e-71	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A061EQ42	1e-130	A0A061EQ42_THECC; WRKY DNA-binding protein 48, putative isoform 1
STRING	EOY06768	1e-131	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-48	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]