PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4307_f_11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 449aa MW: 50174.4 Da PI: 8.4458 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 7e-07 | 7 | 30 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C + ++C+FaHg Neem_4307_f_11 7 YKTKLCVLYQR-GRCTR-PTCSFAHG 30 9**********.*****.*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-9 | 5 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.549 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0044 | 6 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MVERKLYKTK LCVLYQRGRC TRPTCSFAHG DAELQRSFRF VCRLARLRME MPSSSGLSGP 60 ISMEYQLTGL VLFFVRMDFA GGRNSGVGDL RDKLDRRHSP RRSYSPGRDA RDRQKLRGHS 120 PSRSLEKKSD RKRRKTQHLD GQGEFSRSLK ISDGIEDRVK EGKATPSGSK VVLQEQNHVQ 180 LKEVQLVINR LEHQKHQLES YVEEKVQEAD ILSSRIKELE TQLQQEKEEC RRSEARLQKL 240 GDQLGLDVAK AGGNDEDSSI NIVSDAETPN YHLVGPQNDM QTISSPNKKK TYAYQDTADG 300 SMPPANLIGD GGRQAESIQL KKASHWNLHP AKSSVDIEVE AVNNGNSNHG PLADDIKLKR 360 EKSVSTSFAS VDKLKSLRSA NVLPSTGMAA HAVDEVEKID EVEMASDGIE KGATYMAKAL 420 PFRLPPPPSV PHNAYLQYEG DDENIDVVD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447506.1 | 1e-149 | zinc finger CCCH domain-containing protein 13 | ||||
Refseq | XP_006469713.1 | 1e-149 | zinc finger CCCH domain-containing protein 13 isoform X1 | ||||
TrEMBL | V4UEP2 | 1e-147 | V4UEP2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469713.1 | 1e-148 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10069 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 3e-48 | C3H family protein |