PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4289_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 724aa MW: 79465.8 Da PI: 7.3872 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.2 | 3.1e-23 | 113 | 214 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + ++ Neem_4289_f_1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA--QN 204 89****************************997556555..8************************************************43..67 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+v+++r+ Neem_4289_f_1 205 GDLCVGIRRA 214 778****996 PP | |||||||
2 | Auxin_resp | 111.6 | 7.6e-37 | 291 | 374 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eF+vk++ v++a++v++ GmRfkmafetedss++++ +Gt+++ + +dp+rWp+S+Wr+L+ Neem_4289_f_1 291 AAALAANGKPFEVVYYPRASTPEFCVKASAVRAAMRVHWHCGMRFKMAFETEDSSRISWfMGTISSAQVADPIRWPKSPWRLLQ 374 678899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-37 | 106 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.01E-28 | 106 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.88E-21 | 112 | 213 | No hit | No description |
PROSITE profile | PS50863 | 12.887 | 113 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-21 | 113 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-22 | 113 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-32 | 291 | 374 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.435 | 612 | 695 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MKEIEKSIDP QLWHACAGSM VQIPPLNSTV FYFPQGHAEH SLGSVNFPSS TPIPPLILCR 60 ATSLKFLADS ETDEVYAKIR LVPIPATEID FEDNDLSLNS AGSDAESDKP ASFAKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVVAKDVHG EIWKFRHIYR GTPRRHLLTT 180 GWSTFVNQKK LVAGDSIVFL RAQNGDLCVG IRRAKKGIGN ANDSLSSGWN SNHGSCVTVN 240 PYGGFSCFLR EEENKMVRNG NMNLNSCGSF NSGGNLRGNG GKVKPEMVLE AAALAANGKP 300 FEVVYYPRAS TPEFCVKASA VRAAMRVHWH CGMRFKMAFE TEDSSRISWF MGTISSAQVA 360 DPIRWPKSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIHLSPFSP PRKKLRLPQQ 420 LDFPLDGQFS MPSFSGNPLG PSSPLCCLSD NTPAGIQGAR HAQFGISLSD FHLNKKLQSG 480 LFLSSFQQLN PNSRVSDGIL TSHTSSNENL SCLLTMGNSS QNLEKSDSVK KHQFLLFGQP 540 ILTEQQISHS CSSDVNSQVF GKSSSDGSSD RLKALSDGLG STHEQQILPE KSSSSEFFWN 600 RGLRATEPTL DTGHCKVFME SEDVGRTLDL SALGSYEELY QRLANMFGIE RSEMLSHVLY 660 QDASGAMKQT GDEPFSDFMK TAKRLTILMG SSSDSVGRTW ITGMRTPKNG LDASNKTGPL 720 SIFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 8e-70 | 8 | 395 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424557.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2H5NDX2 | 0.0 | A0A2H5NDX2_CITUN; Auxin response factor | ||||
STRING | XP_006424557.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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