PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_42636_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ZF-HD
Protein Properties Length: 93aa    MW: 10208.5 Da    PI: 8.7029
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_42636_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.41.1e-302882460
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                    vrY eC+kNhAa++Gg+avDGC+Efm+s g++  ++al+CaACgCHRnFHRre+e+e
  Neem_42636_f_1 28 VRYAECQKNHAANIGGYAVDGCREFMAS-GAN-GTSALTCAACGCHRNFHRREEETE 82
                    89*************************9.665.4689****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-25291IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.6E-282879IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-252978IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.2043078IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MMKKRQVVVK KESSRRNSST SSSVVRCVRY AECQKNHAAN IGGYAVDGCR EFMASGANGT  60
SALTCAACGC HRNFHRREEE TEVVCEYSPP SSN
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440596.11e-49mini zinc finger protein 3
SwissprotQ2Q4935e-41MIF3_ARATH; Mini zinc finger protein 3
TrEMBLV4TVB03e-48V4TVB0_9ROSI; Uncharacterized protein
STRINGXP_006440596.15e-49(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94428114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.11e-39mini zinc finger