PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4249_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 234aa    MW: 26593 Da    PI: 8.2597
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4249_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.6e-12103179678
                    ..-HHH.HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT- CS
             B3   6 tpsdvl.ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegD 78 
                    t sd+  k+gr+v+pk++a+++  + ++++++ ++++d++g+ W+++++y  +++s +yvl+ G ke+  +++ ++gD
  Neem_4249_f_1 103 TVSDADpKNGRVVVPKRCAKDYfpKVSEPQGFPIKIQDTNGNDWDFRFRYwpNNNSTMYVLE-GLKEYMISKKCQAGD 179
                    4444441679**************7788899*******************888888889999.**********99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-1398179IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.001698191IPR003340B3 DNA binding domain
CDDcd100173.95E-14100179No hitNo description
Gene3DG3DSA:2.40.330.101.5E-18100198IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-9108179IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPFINSSPCP WRDLQEPQEV ASDKLITVST PGAPSEKDAP LSQSREQFSA DTLGGADTPG  60
SSINNEQPRS YAPRKIHSYR RYTPMTSEEE LQQIQKEYPK TLTVSDADPK NGRVVVPKRC  120
AKDYFPKVSE PQGFPIKIQD TNGNDWDFRF RYWPNNNSTM YVLEGLKEYM ISKKCQAGDK  180
ETKSCGHFSC ILSDRSRRKA GHWIEKDSTK CNMSEGMLTK MNYVIISFPQ AMPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-28831841109B3 domain-containing transcription repressor VAL1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955804.14e-67B3 domain-containing protein Os07g0679700-like
STRINGXP_006464884.11e-67(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1811179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.13e-29HSI2-like 1