PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_42237_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 38756.7 Da PI: 4.3612 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.1e-16 | 88 | 135 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 ykGVr+++ +g++ AeIrd + r r++lg+f taeeAa a+ + ++++e Neem_42237_f_1 88 YKGVRRRP-WGKYSAEIRDpF-----RrVRIWLGTFNTAEEAASAYRKKKLEFE 135 9*******.**********66.....45*******************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.43E-16 | 87 | 134 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.5E-17 | 87 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.993 | 87 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-21 | 87 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-9 | 88 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.34E-21 | 88 | 127 | No hit | No description |
PRINTS | PR00367 | 4.1E-10 | 88 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MRKIRIMCRD PEATDSSSED DECNNSKRNQ FRGAKRFVVE ISLPVPLPGF PSETCGDNAS 60 NHNDSQSKSY VDNKFDENKQ TQRSSTMYKG VRRRPWGKYS AEIRDPFRRV RIWLGTFNTA 120 EEAASAYRKK KLEFESMLGP QKDKNLSIAS TFMPEEATAP QKDKNLSIAS TFMPEEATEL 180 FSPPSPSSVL DVTASTQLGN ELGNPIKEET GDDDKFLKEC YVGNFAEECS GKKIGKEANA 240 EEIRKLCDVE QQYEEEESIA YLLEMPHLSP STTKELGLVD HFMQQRTDYE QIYDDYSYNY 300 WEDPSDYELE NDQMSEFSNF QPTLEDFAWA DGTLNLTCS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006485784.1 | 1e-109 | ethylene-responsive transcription factor CRF6-like | ||||
TrEMBL | A0A2H5PM39 | 1e-107 | A0A2H5PM39_CITUN; Uncharacterized protein | ||||
STRING | XP_006485784.1 | 1e-108 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 6e-20 | cytokinin response factor 4 |