PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_41919_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 136aa MW: 14067.5 Da PI: 7.9168 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.4 | 1.1e-13 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Neem_41919_f_1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 46.9 | 4.3e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Neem_41919_f_1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP | |||||||
3 | zf-LSD1 | 42 | 1.5e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Neem_41919_f_1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 7.2E-4 | 23 | 126 | No hit | No description |
TIGRFAMs | TIGR01053 | 8.8E-13 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 4.74E-5 | 28 | 126 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 1.3E-10 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.8E-15 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-12 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.1E-12 | 102 | 130 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.2E-13 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 136 aa Download sequence Send to blast |
MPVPLAPYPS PPAPYTPPAN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT GVGVST |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021827383.1 | 2e-91 | protein LOL1 | ||||
Refseq | XP_021827384.1 | 2e-91 | protein LOL1 | ||||
Refseq | XP_021827385.1 | 2e-91 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 2e-76 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A314UNX3 | 5e-90 | A0A314UNX3_PRUYE; Protein LOL1 | ||||
TrEMBL | A0A314YTU1 | 5e-90 | A0A314YTU1_PRUYE; Protein LOL1 | ||||
TrEMBL | M5WNS8 | 5e-90 | M5WNS8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10943 | 9e-91 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-62 | lsd one like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|