PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4185_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 300aa MW: 33362.9 Da PI: 8.3237 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9e-19 | 143 | 197 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Neem_4185_f_1 143 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 197 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.1 | 3.2e-40 | 143 | 232 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Neem_4185_f_1 143 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 232 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.459 | 139 | 199 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-15 | 141 | 203 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-18 | 141 | 207 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 143 | 197 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.5E-16 | 143 | 197 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.50E-17 | 143 | 200 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 174 | 197 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.9E-10 | 199 | 233 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.0E-25 | 199 | 242 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGFDDGCNTG LVLGLGFTAH IETTPSKANL NQIPKRPSLK FDPAVMEATC FEPSLSLGLP 60 GEIYHQTASG AVSRKVNIDM NKGVEESGAA HDQPYRQASP HSAVSSFSSG RVKRERDLSS 120 EEIEVERVSS RVSDEDEDGV NARKKLRLTK EQSALLEESF KQHSTLNPKQ KQALARQLNL 180 RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CCETLTDENR RLQKELQELK ALKLAQPLYM 240 HMPAATLTMC PSCERIGGIG DGNSKGPFPM APKPHCYNPF TNPSAAFVKA LLYEACDPSK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 199 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006466408.1 | 1e-162 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 1e-106 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A061DHW3 | 1e-161 | A0A061DHW3_THECC; Homeodomain-leucine zipper protein HD4 | ||||
STRING | EOX91792 | 1e-162 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-89 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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