PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_4176_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 873aa MW: 96276.2 Da PI: 6.8219 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.9 | 3.9e-18 | 324 | 423 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+++F++++ +++l Neem_4176_f_1 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGVPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTITFSRID-PGGKL 417 99**************************666778999***************9989999999***9.********************887.77777 PP EEEEE- CS B3 93 vvkvfr 98 +++++ Neem_4176_f_1 418 IMGFRK 423 777776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-29 | 320 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-20 | 321 | 423 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.79E-23 | 322 | 423 | No hit | No description |
PROSITE profile | PS50863 | 11.039 | 324 | 425 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-21 | 324 | 425 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-15 | 324 | 423 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.422 | 593 | 643 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.5E-10 | 598 | 640 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 873 aa Download sequence Send to blast |
MYARSAYENF VFCDTFHLDE PGWRECYLCC KRLHCGCIAS KPLLELLDYG GVGCHSCAIS 60 SRLHLSRKNG LSDGHLWDCC YSICLIQRDE IRNGFGAPTV NDSHNIRSTA IESRATAIES 120 RVVGDGGAEG KLTHLCRIME ANESNLLAPS HRGDTNVSLG KEKREDIVHS FGEVGAGFSS 180 ATQPSAGSSK FTKPDSDRSM LDIRDMHESV VQRSLSMSLA VASGNSKFVI PFSNGAADVR 240 EQSKAPPSFQ QGQRSRPILP KPPKTGLTIT SETSKSTGSQ LRIARPPAEG RGKNHLLPRY 300 WPRITDQELQ QLSGDLNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGVP 360 LRIQDVKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL RAGDTITFSR IDPGGKLIMG 420 FRKASNAEDT QDAQTSAVPN GTQSGDISLS GVTENLPTVS GYSGLFQTLK GSKEPHVNAL 480 SEHSTLAEGA INWHKSENHV GKTNGDSPQQ SAPSMEKKRT RNIGSKNKRL LMHSEEALEL 540 RLTWEEAQDL LRPPPSAKPS IVTIEDHEFE EYDEPPVFGK RTIFTSRPSG TWFRGQEQWA 600 QCDDCSKWRK LPMDVLLPPK WTCSDNVWDS IRCSCSAPEE MSQKDLENLL KVGRDCKKRK 660 IAEGHKLDEE HEPSGLDALA SAAVLGDDAG DSGEPSVGAT TKHPRHRPGC TCIVCIQPPS 720 GKGKHKPTCT CNVCMTVKRR FKTLMLRKKR RQSEREAEAA EVAQKNNDNK ESKADVPEAE 780 TSSGQIDLDL NCHPNREEMQ TEEPGMNIMT LEQRTNVPLE NYMQQQQQPN GLGSLSSCVL 840 QQAAANGEND KLMSDEGFLA SVGWGRDQEP NLD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 7e-73 | 302 | 431 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 737 | 748 | KRRFKTLMLRKK |
2 | 737 | 749 | KRRFKTLMLRKKR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM441534 | 7e-51 | AM441534.1 Vitis vinifera contig VV78X035471.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432020.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Refseq | XP_006491930.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | V4T1N2 | 0.0 | V4T1N2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491930.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006432020.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6923 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |