PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4164_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | FAR1 | ||||||||
Protein Properties | Length: 163aa MW: 18409 Da PI: 8.9404 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 96 | 4.4e-30 | 46 | 134 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y+eYA++vGFs+r+ +s+ks+r+g+i++r++ C+keg++ +++k+ + + r+r++ r gCka++ vkkek g+w+vtk++ eHnH+l+ Neem_4164_f_1 46 LYDEYARRVGFSTRIVSSRKSERDGSIISRRLACNKEGFNVNRQKSGRVQIRKRESIREGCKAMILVKKEKPGRWVVTKFVREHNHPLV 134 6*********************************************99999************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-27 | 46 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MEIIVEDQTV ITESPTGGES GVCEVDASHE PYEGMLFESE EAAKALYDEY ARRVGFSTRI 60 VSSRKSERDG SIISRRLACN KEGFNVNRQK SGRVQIRKRE SIREGCKAMI LVKKEKPGRW 120 VVTKFVREHN HPLVISSEKV QPAPLTGICK GWRSEAKTLL EKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003632074.2 | 2e-79 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 8e-27 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1Q3CZN8 | 3e-78 | A0A1Q3CZN8_CEPFO; FAR1 domain-containing protein | ||||
TrEMBL | A0A438I5G4 | 2e-78 | A0A438I5G4_VITVI; Protein FAR1-related sequence 5 | ||||
STRING | VIT_05s0102g00390.t01 | 9e-79 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19294 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-43 | FAR1 family protein |
Publications ? help Back to Top | |||
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