PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_41645_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 613aa MW: 64370.1 Da PI: 8.4527 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 8e-06 | 77 | 97 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C++s++++ +L++H++tH Neem_41645_f_1 77 CAYCNESCKSRTELENHMKTH 97 ********************9 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00024 | 343 | 365 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+ +F+ L+ H+ H Neem_41645_f_1 343 FTCYICSAVFTAARGLQAHMLEH 365 89******************998 PP | |||||||
3 | zf-C2H2 | 11.2 | 0.0012 | 488 | 510 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C +Cgk s+ L +H+r+ H Neem_41645_f_1 488 RCLICGKEMSSVRALASHLRSsH 510 6*******************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 37 | 31 | 55 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.0087 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.767 | 75 | 98 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.17E-5 | 76 | 129 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.032 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.9 | 136 | 158 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.019 | 138 | 156 | No hit | No description |
SMART | SM00355 | 9.9 | 255 | 278 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.061 | 282 | 304 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.6 | 282 | 304 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 284 | 304 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.6 | 313 | 335 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 315 | 335 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 343 | 365 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.39E-7 | 343 | 394 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 345 | 365 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.8 | 372 | 395 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.037 | 372 | 402 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 374 | 395 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.44 | 487 | 510 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 489 | 510 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 613 aa Download sequence Send to blast |
KATSKQTNGP KTNGDAAGGA DALLNNNQAG ASCDICERGD FASEAELAAH RKLAHHKEAT 60 SQAKNGPTST CPVSLLCAYC NESCKSRTEL ENHMKTHSSV GHATGKHKCN ICDELCPSAG 120 VLAEHKLTHC KVVQGSACTV CRASVTTEEQ FRTHLRQHSG GGNPPASAPL CLPVQCVICR 180 QTLVSEVESG EPSSMVPTSS APLPGQAVSY VCADCYRRHT KLSSRSPPST PLALSSPSRQ 240 DDAGPESSSD KDLTPRCGEC GLKAESAAAL EAHIAAAHKN TYQCIKCQAS FESERDIRLH 300 VSAHLLAEGA AANECRLCRR QLSTPLQLQL HLIEHTFAGC ASFTCYICSA VFTAARGLQA 360 HMLEHGLSAR PYDCSHCGLR FFFRAELDNH TLGHHAHALA QALPALPTVL PGDDEEAVAA 420 AAAAQASFYQ HLSNTLGSNG LDLHYYTVPA GEAGVKSPRK SSVRSNGSNG RERDREGSRT 480 PLAATKPRCL ICGKEMSSVR ALASHLRSSH GLPAVQRGAA GPGCPAASPG RAAPGPRRLQ 540 PPAPHRGGRE AGAVCPASQG RGGRRGGLGR REPPYPSCHT NFGFVAGTGN GVGASVGGRD 600 RQSDRGTGRK TRQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1B6H617 | 1e-128 | A0A1B6H617_9HEMI; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1B6JWE6 | 1e-129 | A0A1B6JWE6_9HEMI; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2P8Y5G3 | 1e-124 | A0A2P8Y5G3_BLAGE; Zinc finger protein 521 | ||||
STRING | KDR09421 | 1e-118 | (Zootermopsis nevadensis) |